Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Gm33320-201ENSMUST00000192232 530 ntBASIC17.38■□□□□ 0.37
Scn11aQ9R053 Ighv5-13-201ENSMUST00000193550 290 ntBASIC17.38■□□□□ 0.37
Scn11aQ9R053 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Scn11aQ9R053 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn11aQ9R053 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Scn11aQ9R053 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn11aQ9R053 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn11aQ9R053 AC154231.1-201ENSMUST00000220564 2175 ntBASIC17.37■□□□□ 0.37
Scn11aQ9R053 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Scn11aQ9R053 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn11aQ9R053 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Scn11aQ9R053 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC17.37■□□□□ 0.37
Scn11aQ9R053 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn11aQ9R053 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC17.37■□□□□ 0.37
Scn11aQ9R053 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn11aQ9R053 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC17.37■□□□□ 0.37
Scn11aQ9R053 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn11aQ9R053 Ldb3-207ENSMUST00000227819 1499 ntBASIC17.37■□□□□ 0.37
Scn11aQ9R053 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn11aQ9R053 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Scn11aQ9R053 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Scn11aQ9R053 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn11aQ9R053 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn11aQ9R053 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Gm42632-201ENSMUST00000201707 2411 ntBASIC17.36■□□□□ 0.37
Scn11aQ9R053 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn11aQ9R053 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Scn11aQ9R053 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC17.35■□□□□ 0.37
Scn11aQ9R053 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Carlr-201ENSMUST00000181515 2574 ntBASIC17.35■□□□□ 0.37
Scn11aQ9R053 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC17.35■□□□□ 0.37
Scn11aQ9R053 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Gm18018-201ENSMUST00000198273 408 ntBASIC17.35■□□□□ 0.37
Scn11aQ9R053 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC17.35■□□□□ 0.37
Scn11aQ9R053 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC17.35■□□□□ 0.37
Scn11aQ9R053 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn11aQ9R053 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Gm12091-201ENSMUST00000146791 830 ntBASIC17.34■□□□□ 0.37
Scn11aQ9R053 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms