Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 AC025913.2-201ENSMUST00000220136 1766 ntBASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Mir5126-201ENSMUST00000175513 77 ntBASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Ap5m1-205ENSMUST00000227431 3757 ntBASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim11Q99PQ2 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Carlr-201ENSMUST00000181515 2574 ntBASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Mir5131-201ENSMUST00000175426 93 ntBASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Gm15590-201ENSMUST00000078419 552 ntBASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Gm12620-201ENSMUST00000119791 1986 ntBASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Gm12612-201ENSMUST00000140182 1986 ntBASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim11Q99PQ2 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Gm9449-201ENSMUST00000207265 1011 ntBASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim11Q99PQ2 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
Trim11Q99PQ2 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trim11Q99PQ2 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim11Q99PQ2 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms