Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC14.48□□□□□ -0.09
Msh4Q99MT2 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Gm14494-201ENSMUST00000118786 435 ntBASIC14.48□□□□□ -0.09
Msh4Q99MT2 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC14.48□□□□□ -0.09
Msh4Q99MT2 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC14.48□□□□□ -0.09
Msh4Q99MT2 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Ap5m1-205ENSMUST00000227431 3757 ntBASIC14.48□□□□□ -0.09
Msh4Q99MT2 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC14.48□□□□□ -0.09
Msh4Q99MT2 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msh4Q99MT2 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Msh4Q99MT2 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC14.47□□□□□ -0.09
Msh4Q99MT2 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msh4Q99MT2 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msh4Q99MT2 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msh4Q99MT2 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msh4Q99MT2 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msh4Q99MT2 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Msh4Q99MT2 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC14.47□□□□□ -0.09
Msh4Q99MT2 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Msh4Q99MT2 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msh4Q99MT2 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msh4Q99MT2 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Msh4Q99MT2 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msh4Q99MT2 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msh4Q99MT2 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msh4Q99MT2 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msh4Q99MT2 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
Msh4Q99MT2 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Gm11960-202ENSMUST00000181063 2858 ntBASIC14.46□□□□□ -0.09
Msh4Q99MT2 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Gm11453-201ENSMUST00000117318 1007 ntBASIC14.46□□□□□ -0.09
Msh4Q99MT2 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Gm8318-201ENSMUST00000182954 872 ntBASIC14.46□□□□□ -0.09
Msh4Q99MT2 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Camk2g-217ENSMUST00000226630 1937 ntBASIC14.46□□□□□ -0.09
Msh4Q99MT2 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msh4Q99MT2 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Msh4Q99MT2 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Msh4Q99MT2 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Msh4Q99MT2 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC14.46□□□□□ -0.1
Msh4Q99MT2 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Msh4Q99MT2 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Msh4Q99MT2 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Msh4Q99MT2 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC14.45□□□□□ -0.1
Msh4Q99MT2 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msh4Q99MT2 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msh4Q99MT2 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msh4Q99MT2 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msh4Q99MT2 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msh4Q99MT2 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msh4Q99MT2 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msh4Q99MT2 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
Msh4Q99MT2 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms