Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Gm8096-201ENSMUST00000209921 1591 ntBASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Gm15427-201ENSMUST00000117288 531 ntBASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Brf1Q8CFK2 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Gm6226-201ENSMUST00000117765 1146 ntBASIC17.91■□□□□ 0.46
Brf1Q8CFK2 H2af-ps-201ENSMUST00000119066 295 ntBASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC17.91■□□□□ 0.46
Brf1Q8CFK2 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Brf1Q8CFK2 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Tcf21-202ENSMUST00000218002 1788 ntBASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Gm25911-201ENSMUST00000157621 56 ntBASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Gm17271-201ENSMUST00000165535 355 ntBASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 CT025555.1-201ENSMUST00000225901 1217 ntBASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
Brf1Q8CFK2 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Brf1Q8CFK2 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Brf1Q8CFK2 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Trav13-3-201ENSMUST00000117226 336 ntBASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Gm11594-201ENSMUST00000122313 162 ntBASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Rpph1-201ENSMUST00000175096 319 ntBASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Brf1Q8CFK2 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Brf1Q8CFK2 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 68.1 ms