Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Gm27646-201ENSMUST00000183989 110 ntBASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 AC153889.1-201ENSMUST00000219257 330 ntBASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 AC164567.1-201ENSMUST00000219185 960 ntBASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 AC124569.2-201ENSMUST00000225998 818 ntBASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Gm10710-201ENSMUST00000047876 3971 ntBASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Scaf4Q6PFF0 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 AC166574.6-201ENSMUST00000227889 1806 ntBASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Gm6296-201ENSMUST00000222599 943 ntBASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 AC121577.1-201ENSMUST00000227302 707 ntBASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Gm28182-201ENSMUST00000188354 2477 ntBASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Scaf4Q6PFF0 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
Scaf4Q6PFF0 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
Scaf4Q6PFF0 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms