Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rnf220Q6PDX6 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Gm9889-202ENSMUST00000206983 1577 ntBASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 AC117194.1-201ENSMUST00000224847 3002 ntBASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Gm38346-201ENSMUST00000192379 2639 ntBASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC14.11□□□□□ -0.15
Rnf220Q6PDX6 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Gm37861-201ENSMUST00000193534 2869 ntBASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Gm11860-201ENSMUST00000122346 1010 ntBASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 AC153881.2-201ENSMUST00000214877 204 ntBASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Gm18032-201ENSMUST00000222541 538 ntBASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf220Q6PDX6 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms