Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC19.19■□□□□ 0.66
Trim28Q62318 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Trim28Q62318 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim28Q62318 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim28Q62318 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim28Q62318 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim28Q62318 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim28Q62318 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim28Q62318 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim28Q62318 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Trim28Q62318 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim28Q62318 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim28Q62318 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim28Q62318 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim28Q62318 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.18■□□□□ 0.66
Trim28Q62318 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Gm5357-201ENSMUST00000212720 1924 ntBASIC19.18■□□□□ 0.66
Trim28Q62318 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC19.18■□□□□ 0.66
Trim28Q62318 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Trim28Q62318 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC19.18■□□□□ 0.66
Trim28Q62318 Cd63-ps-201ENSMUST00000145417 875 ntBASIC19.18■□□□□ 0.66
Trim28Q62318 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Trim28Q62318 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Trim28Q62318 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Trim28Q62318 Gm9252-201ENSMUST00000172364 1602 ntBASIC19.18■□□□□ 0.66
Trim28Q62318 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim28Q62318 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim28Q62318 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim28Q62318 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim28Q62318 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim28Q62318 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim28Q62318 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim28Q62318 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim28Q62318 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trim28Q62318 Mir6977-201ENSMUST00000184960 64 ntBASIC19.17■□□□□ 0.66
Trim28Q62318 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC19.17■□□□□ 0.66
Trim28Q62318 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim28Q62318 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim28Q62318 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim28Q62318 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trim28Q62318 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Trim28Q62318 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim28Q62318 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim28Q62318 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC19.17■□□□□ 0.66
Trim28Q62318 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim28Q62318 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
Trim28Q62318 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Trim28Q62318 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC19.16■□□□□ 0.66
Trim28Q62318 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC19.16■□□□□ 0.66
Trim28Q62318 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC19.16■□□□□ 0.66
Trim28Q62318 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Trim28Q62318 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
Trim28Q62318 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim28Q62318 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim28Q62318 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Trim28Q62318 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim28Q62318 Efs-202ENSMUST00000227037 2540 ntBASIC19.15■□□□□ 0.66
Trim28Q62318 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim28Q62318 Carlr-201ENSMUST00000181515 2574 ntBASIC19.15■□□□□ 0.66
Trim28Q62318 Gm10584-201ENSMUST00000207036 2628 ntBASIC19.15■□□□□ 0.66
Trim28Q62318 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim28Q62318 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
Trim28Q62318 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC19.15■□□□□ 0.66
Trim28Q62318 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC19.15■□□□□ 0.66
Trim28Q62318 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC19.15■□□□□ 0.66
Trim28Q62318 Gm15321-201ENSMUST00000121290 288 ntBASIC19.15■□□□□ 0.66
Trim28Q62318 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Trim28Q62318 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms