Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Ift88Q61371 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
Ift88Q61371 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Ift88Q61371 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC16.45■□□□□ 0.22
Ift88Q61371 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC16.45■□□□□ 0.22
Ift88Q61371 Gm5253-201ENSMUST00000187104 1025 ntBASIC16.45■□□□□ 0.22
Ift88Q61371 AC164567.1-201ENSMUST00000219185 960 ntBASIC16.45■□□□□ 0.22
Ift88Q61371 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Ift88Q61371 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Gm44645-201ENSMUST00000205492 1653 ntBASIC16.45■□□□□ 0.22
Ift88Q61371 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Nupl1-207ENSMUST00000225311 2475 ntBASIC16.45■□□□□ 0.22
Ift88Q61371 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC16.45■□□□□ 0.22
Ift88Q61371 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ift88Q61371 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Ift88Q61371 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Ift88Q61371 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ift88Q61371 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ift88Q61371 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Ift88Q61371 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC16.44■□□□□ 0.22
Ift88Q61371 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ift88Q61371 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Ift88Q61371 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC16.44■□□□□ 0.22
Ift88Q61371 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ift88Q61371 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC16.44■□□□□ 0.22
Ift88Q61371 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Ift88Q61371 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC16.44■□□□□ 0.22
Ift88Q61371 Gm9682-201ENSMUST00000197505 556 ntBASIC16.44■□□□□ 0.22
Ift88Q61371 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ift88Q61371 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Ift88Q61371 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Ift88Q61371 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ift88Q61371 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ift88Q61371 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Ift88Q61371 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ift88Q61371 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ift88Q61371 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ift88Q61371 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Ift88Q61371 Gm3928-201ENSMUST00000121141 1307 ntBASIC16.44■□□□□ 0.22
Ift88Q61371 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Ift88Q61371 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ift88Q61371 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Ift88Q61371 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC16.43■□□□□ 0.22
Ift88Q61371 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ift88Q61371 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ift88Q61371 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ift88Q61371 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ift88Q61371 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ift88Q61371 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Ift88Q61371 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ift88Q61371 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
Ift88Q61371 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ift88Q61371 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ift88Q61371 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC16.43■□□□□ 0.22
Ift88Q61371 Gm37153-201ENSMUST00000193637 231 ntBASIC16.43■□□□□ 0.22
Ift88Q61371 Gm44357-201ENSMUST00000195897 142 ntBASIC16.43■□□□□ 0.22
Ift88Q61371 Gm19658-201ENSMUST00000196231 138 ntBASIC16.43■□□□□ 0.22
Ift88Q61371 Gm44367-201ENSMUST00000196836 138 ntBASIC16.43■□□□□ 0.22
Ift88Q61371 Gm44350-201ENSMUST00000197197 138 ntBASIC16.43■□□□□ 0.22
Ift88Q61371 Gm44390-201ENSMUST00000197533 144 ntBASIC16.43■□□□□ 0.22
Ift88Q61371 Gm6089-201ENSMUST00000197666 938 ntBASIC16.43■□□□□ 0.22
Ift88Q61371 Gm44313-201ENSMUST00000198018 138 ntBASIC16.43■□□□□ 0.22
Ift88Q61371 Gm44486-201ENSMUST00000198508 138 ntBASIC16.43■□□□□ 0.22
Ift88Q61371 Gm44314-201ENSMUST00000199263 138 ntBASIC16.43■□□□□ 0.22
Ift88Q61371 Gm44394-201ENSMUST00000199558 138 ntBASIC16.43■□□□□ 0.22
Ift88Q61371 Gm44484-201ENSMUST00000199873 138 ntBASIC16.43■□□□□ 0.22
Ift88Q61371 Gm44466-201ENSMUST00000200264 138 ntBASIC16.43■□□□□ 0.22
Ift88Q61371 Gm44359-201ENSMUST00000200671 138 ntBASIC16.43■□□□□ 0.22
Ift88Q61371 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ift88Q61371 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ift88Q61371 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ift88Q61371 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Ift88Q61371 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ift88Q61371 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ift88Q61371 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC16.43■□□□□ 0.22
Ift88Q61371 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Ift88Q61371 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ift88Q61371 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ift88Q61371 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ift88Q61371 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ift88Q61371 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ift88Q61371 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ift88Q61371 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ift88Q61371 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ift88Q61371 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms