Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf180Q3U827 Gm1335-201ENSMUST00000121653 386 ntBASIC17.23■□□□□ 0.35
Rnf180Q3U827 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf180Q3U827 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf180Q3U827 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC17.23■□□□□ 0.35
Rnf180Q3U827 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf180Q3U827 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf180Q3U827 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf180Q3U827 Gm3222-201ENSMUST00000071282 990 ntBASIC17.23■□□□□ 0.35
Rnf180Q3U827 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC17.23■□□□□ 0.35
Rnf180Q3U827 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf180Q3U827 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf180Q3U827 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf180Q3U827 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf180Q3U827 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf180Q3U827 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
Rnf180Q3U827 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 AC115863.1-201ENSMUST00000214815 1813 ntBASIC17.22■□□□□ 0.35
Rnf180Q3U827 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Gm15371-201ENSMUST00000117057 784 ntBASIC17.22■□□□□ 0.35
Rnf180Q3U827 Trav13-3-201ENSMUST00000117226 336 ntBASIC17.22■□□□□ 0.35
Rnf180Q3U827 Gm11803-201ENSMUST00000119966 444 ntBASIC17.22■□□□□ 0.35
Rnf180Q3U827 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 B9d1os-201ENSMUST00000137010 674 ntBASIC17.22■□□□□ 0.35
Rnf180Q3U827 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Gm4971-201ENSMUST00000205991 1108 ntBASIC17.22■□□□□ 0.35
Rnf180Q3U827 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC17.22■□□□□ 0.35
Rnf180Q3U827 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf180Q3U827 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Gm5637-201ENSMUST00000153890 1119 ntBASIC17.21■□□□□ 0.35
Rnf180Q3U827 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Gm4691-201ENSMUST00000182339 1000 ntBASIC17.21■□□□□ 0.35
Rnf180Q3U827 Gm27331-201ENSMUST00000183705 60 ntBASIC17.21■□□□□ 0.35
Rnf180Q3U827 Gm29396-201ENSMUST00000185659 716 ntBASIC17.21■□□□□ 0.35
Rnf180Q3U827 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Gm34767-201ENSMUST00000191813 1062 ntBASIC17.21■□□□□ 0.35
Rnf180Q3U827 Gm38158-201ENSMUST00000194617 339 ntBASIC17.21■□□□□ 0.35
Rnf180Q3U827 Gm43094-201ENSMUST00000196549 921 ntBASIC17.21■□□□□ 0.35
Rnf180Q3U827 Gm2451-201ENSMUST00000199447 999 ntBASIC17.21■□□□□ 0.35
Rnf180Q3U827 Gm10290-201ENSMUST00000200451 999 ntBASIC17.21■□□□□ 0.35
Rnf180Q3U827 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf180Q3U827 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Rnf180Q3U827 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
Rnf180Q3U827 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rnf180Q3U827 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rnf180Q3U827 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rnf180Q3U827 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Rnf180Q3U827 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rnf180Q3U827 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC17.2■□□□□ 0.34
Rnf180Q3U827 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC17.2■□□□□ 0.34
Rnf180Q3U827 Gm20482-202ENSMUST00000174729 825 ntBASIC17.2■□□□□ 0.34
Rnf180Q3U827 Gm5523-201ENSMUST00000180415 997 ntBASIC17.2■□□□□ 0.34
Rnf180Q3U827 Gm18905-201ENSMUST00000205454 928 ntBASIC17.2■□□□□ 0.34
Rnf180Q3U827 Gm29705-201ENSMUST00000212598 474 ntBASIC17.2■□□□□ 0.34
Rnf180Q3U827 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rnf180Q3U827 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rnf180Q3U827 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rnf180Q3U827 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC17.2■□□□□ 0.34
Rnf180Q3U827 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rnf180Q3U827 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rnf180Q3U827 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 81.7 ms