Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Col8a1Q00780 Gm6263-201ENSMUST00000120029 1342 ntBASIC12.66□□□□□ -0.38
Col8a1Q00780 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Col8a1Q00780 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Col8a1Q00780 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC12.66□□□□□ -0.38
Col8a1Q00780 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Gm4204-201ENSMUST00000110798 1231 ntBASIC12.66□□□□□ -0.38
Col8a1Q00780 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Gm27680-201ENSMUST00000184192 160 ntBASIC12.66□□□□□ -0.38
Col8a1Q00780 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC12.66□□□□□ -0.38
Col8a1Q00780 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC12.66□□□□□ -0.38
Col8a1Q00780 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC12.66□□□□□ -0.38
Col8a1Q00780 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC12.66□□□□□ -0.38
Col8a1Q00780 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Col8a1Q00780 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
Col8a1Q00780 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Col8a1Q00780 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col8a1Q00780 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col8a1Q00780 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC12.65□□□□□ -0.38
Col8a1Q00780 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col8a1Q00780 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col8a1Q00780 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col8a1Q00780 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col8a1Q00780 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC12.65□□□□□ -0.38
Col8a1Q00780 Gm16026-204ENSMUST00000162652 683 ntBASIC12.65□□□□□ -0.38
Col8a1Q00780 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Col8a1Q00780 Gm24694-201ENSMUST00000180054 110 ntBASIC12.65□□□□□ -0.38
Col8a1Q00780 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Col8a1Q00780 Gm27663-201ENSMUST00000184839 110 ntBASIC12.65□□□□□ -0.38
Col8a1Q00780 Gm37748-201ENSMUST00000194379 1140 ntBASIC12.65□□□□□ -0.38
Col8a1Q00780 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC12.65□□□□□ -0.38
Col8a1Q00780 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Col8a1Q00780 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC12.65□□□□□ -0.38
Col8a1Q00780 AC153962.4-201ENSMUST00000217878 242 ntBASIC12.65□□□□□ -0.38
Col8a1Q00780 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Col8a1Q00780 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Col8a1Q00780 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col8a1Q00780 Gm7669-201ENSMUST00000210184 1603 ntBASIC12.65□□□□□ -0.38
Col8a1Q00780 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC12.65□□□□□ -0.38
Col8a1Q00780 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.39
Col8a1Q00780 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.39
Col8a1Q00780 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Gm8096-201ENSMUST00000209921 1591 ntBASIC12.64□□□□□ -0.39
Col8a1Q00780 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Col8a1Q00780 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC12.64□□□□□ -0.39
Col8a1Q00780 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Gm15824-201ENSMUST00000119516 955 ntBASIC12.64□□□□□ -0.39
Col8a1Q00780 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC12.64□□□□□ -0.39
Col8a1Q00780 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Col8a1Q00780 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC12.64□□□□□ -0.39
Col8a1Q00780 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Ighv8-7-201ENSMUST00000194349 297 ntBASIC12.64□□□□□ -0.39
Col8a1Q00780 Gm6266-201ENSMUST00000203844 806 ntBASIC12.64□□□□□ -0.39
Col8a1Q00780 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC12.64□□□□□ -0.39
Col8a1Q00780 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC12.64□□□□□ -0.39
Col8a1Q00780 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC12.64□□□□□ -0.39
Col8a1Q00780 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC12.64□□□□□ -0.39
Col8a1Q00780 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms