Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx1P48377 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx1P48377 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx1P48377 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx1P48377 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Rfx1P48377 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx1P48377 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx1P48377 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx1P48377 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx1P48377 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Rfx1P48377 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx1P48377 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
Rfx1P48377 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Rfx1P48377 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Rfx1P48377 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Rfx1P48377 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC17.76■□□□□ 0.43
Rfx1P48377 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx1P48377 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx1P48377 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC17.76■□□□□ 0.43
Rfx1P48377 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx1P48377 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx1P48377 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC17.76■□□□□ 0.43
Rfx1P48377 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx1P48377 Gm8097-201ENSMUST00000117903 829 ntBASIC17.76■□□□□ 0.43
Rfx1P48377 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx1P48377 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx1P48377 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
Rfx1P48377 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC17.76■□□□□ 0.43
Rfx1P48377 AC108846.1-201ENSMUST00000214531 513 ntBASIC17.76■□□□□ 0.43
Rfx1P48377 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx1P48377 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx1P48377 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx1P48377 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx1P48377 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC17.76■□□□□ 0.43
Rfx1P48377 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Rfx1P48377 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx1P48377 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx1P48377 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Rfx1P48377 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 Gm43399-201ENSMUST00000202546 2374 ntBASIC17.75■□□□□ 0.43
Rfx1P48377 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Rfx1P48377 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC17.75■□□□□ 0.43
Rfx1P48377 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC17.75■□□□□ 0.43
Rfx1P48377 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC17.75■□□□□ 0.43
Rfx1P48377 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC17.75■□□□□ 0.43
Rfx1P48377 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Rfx1P48377 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 AC124569.2-201ENSMUST00000225998 818 ntBASIC17.75■□□□□ 0.43
Rfx1P48377 Cmtm5-203ENSMUST00000227441 610 ntBASIC17.75■□□□□ 0.43
Rfx1P48377 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Rfx1P48377 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Rfx1P48377 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 Gm5837-201ENSMUST00000191844 1369 ntBASIC17.75■□□□□ 0.43
Rfx1P48377 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx1P48377 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx1P48377 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Rfx1P48377 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx1P48377 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx1P48377 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx1P48377 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx1P48377 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx1P48377 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC17.74■□□□□ 0.43
Rfx1P48377 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC17.74■□□□□ 0.43
Rfx1P48377 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx1P48377 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx1P48377 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Rfx1P48377 Gm10313-201ENSMUST00000095320 1002 ntBASIC17.74■□□□□ 0.43
Rfx1P48377 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms