Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cdx2P43241 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cdx2P43241 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Cdx2P43241 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Cdx2P43241 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Cdx2P43241 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC14.05□□□□□ -0.16
Cdx2P43241 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Gm6912-201ENSMUST00000117218 544 ntBASIC14.05□□□□□ -0.16
Cdx2P43241 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC14.05□□□□□ -0.16
Cdx2P43241 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC14.05□□□□□ -0.16
Cdx2P43241 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC14.05□□□□□ -0.16
Cdx2P43241 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC14.05□□□□□ -0.16
Cdx2P43241 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Cdx2P43241 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Mxra8os-201ENSMUST00000097740 687 ntBASIC14.05□□□□□ -0.16
Cdx2P43241 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Cdx2P43241 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Ldb3-207ENSMUST00000227819 1499 ntBASIC14.05□□□□□ -0.16
Cdx2P43241 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx2P43241 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Cdx2P43241 Dancr-204ENSMUST00000132389 2347 ntBASIC14.04□□□□□ -0.16
Cdx2P43241 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC14.04□□□□□ -0.16
Cdx2P43241 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Cdx2P43241 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC14.04□□□□□ -0.16
Cdx2P43241 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC14.04□□□□□ -0.16
Cdx2P43241 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 Gm22189-201ENSMUST00000103822 86 ntBASIC14.04□□□□□ -0.16
Cdx2P43241 Gm12138-201ENSMUST00000122180 951 ntBASIC14.04□□□□□ -0.16
Cdx2P43241 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC14.04□□□□□ -0.16
Cdx2P43241 Gm9522-201ENSMUST00000182394 926 ntBASIC14.04□□□□□ -0.16
Cdx2P43241 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC14.04□□□□□ -0.16
Cdx2P43241 Gm45384-201ENSMUST00000210451 277 ntBASIC14.04□□□□□ -0.16
Cdx2P43241 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC14.04□□□□□ -0.16
Cdx2P43241 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Cdx2P43241 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx2P43241 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Cdx2P43241 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC14.03□□□□□ -0.16
Cdx2P43241 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Cdx2P43241 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Cdx2P43241 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Cdx2P43241 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Cdx2P43241 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC14.03□□□□□ -0.16
Cdx2P43241 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC14.03□□□□□ -0.16
Cdx2P43241 Ighv5-13-201ENSMUST00000193550 290 ntBASIC14.03□□□□□ -0.16
Cdx2P43241 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Cdx2P43241 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC14.03□□□□□ -0.16
Cdx2P43241 Zkscan3-208ENSMUST00000224820 5398 ntBASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms