Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Sdc1P18828 Gm3272-201ENSMUST00000181181 1229 ntBASIC12.19□□□□□ -0.46
Sdc1P18828 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC12.19□□□□□ -0.46
Sdc1P18828 Gm10698-201ENSMUST00000182663 604 ntBASIC12.19□□□□□ -0.46
Sdc1P18828 Gm27463-201ENSMUST00000183569 57 ntBASIC12.19□□□□□ -0.46
Sdc1P18828 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Sdc1P18828 Gm10566-201ENSMUST00000086739 996 ntBASIC12.19□□□□□ -0.46
Sdc1P18828 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC12.19□□□□□ -0.46
Sdc1P18828 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC12.19□□□□□ -0.46
Sdc1P18828 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC12.19□□□□□ -0.46
Sdc1P18828 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc1P18828 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC12.19□□□□□ -0.46
Sdc1P18828 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC12.18□□□□□ -0.46
Sdc1P18828 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Celf4-206ENSMUST00000224553 1729 ntBASIC12.18□□□□□ -0.46
Sdc1P18828 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Sdc1P18828 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Sdc1P18828 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
Sdc1P18828 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Sdc1P18828 Gm43353-201ENSMUST00000199224 1295 ntBASIC12.18□□□□□ -0.46
Sdc1P18828 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 AC156016.1-201ENSMUST00000227190 1035 ntBASIC12.18□□□□□ -0.46
Sdc1P18828 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Sdc1P18828 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Sdc1P18828 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
Sdc1P18828 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Sdc1P18828 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Sdc1P18828 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sdc1P18828 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC12.18□□□□□ -0.46
Sdc1P18828 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Sdc1P18828 Gm21009-201ENSMUST00000197169 1669 ntBASIC12.17□□□□□ -0.46
Sdc1P18828 Gm38094-201ENSMUST00000195864 2978 ntBASIC12.17□□□□□ -0.46
Sdc1P18828 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC12.17□□□□□ -0.46
Sdc1P18828 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC12.17□□□□□ -0.46
Sdc1P18828 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 AC114585.2-202ENSMUST00000228094 426 ntBASIC12.17□□□□□ -0.46
Sdc1P18828 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC12.17□□□□□ -0.46
Sdc1P18828 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Sdc1P18828 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC12.17□□□□□ -0.46
Sdc1P18828 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms