Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm7230-201ENSMUST00000173026 815 ntBASIC16.07■□□□□ 0.16
RaraP11416 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC16.07■□□□□ 0.16
RaraP11416 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC16.07■□□□□ 0.16
RaraP11416 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RaraP11416 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RaraP11416 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RaraP11416 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RaraP11416 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
RaraP11416 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RaraP11416 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RaraP11416 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RaraP11416 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC16.07■□□□□ 0.16
RaraP11416 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RaraP11416 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RaraP11416 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
RaraP11416 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RaraP11416 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC16.06■□□□□ 0.16
RaraP11416 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RaraP11416 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
RaraP11416 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RaraP11416 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC16.06■□□□□ 0.16
RaraP11416 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
RaraP11416 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RaraP11416 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
RaraP11416 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RaraP11416 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC16.06■□□□□ 0.16
RaraP11416 Gm4899-201ENSMUST00000178708 719 ntBASIC16.06■□□□□ 0.16
RaraP11416 Gm6550-201ENSMUST00000187574 993 ntBASIC16.06■□□□□ 0.16
RaraP11416 Gm43935-201ENSMUST00000203569 1050 ntBASIC16.06■□□□□ 0.16
RaraP11416 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RaraP11416 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RaraP11416 Rps4l-201ENSMUST00000071745 943 ntBASIC16.06■□□□□ 0.16
RaraP11416 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
RaraP11416 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RaraP11416 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
RaraP11416 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RaraP11416 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RaraP11416 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Gm44645-201ENSMUST00000205492 1653 ntBASIC16.05■□□□□ 0.16
RaraP11416 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
RaraP11416 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
RaraP11416 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
RaraP11416 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
RaraP11416 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC16.05■□□□□ 0.16
RaraP11416 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
RaraP11416 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Gm7787-201ENSMUST00000216858 688 ntBASIC16.05■□□□□ 0.16
RaraP11416 Gm18246-201ENSMUST00000221023 728 ntBASIC16.05■□□□□ 0.16
RaraP11416 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC16.05■□□□□ 0.16
RaraP11416 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
RaraP11416 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
RaraP11416 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC16.05■□□□□ 0.16
RaraP11416 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RaraP11416 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
RaraP11416 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC16.04■□□□□ 0.16
RaraP11416 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Gm7862-201ENSMUST00000121461 292 ntBASIC16.04■□□□□ 0.16
RaraP11416 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC16.04■□□□□ 0.16
RaraP11416 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
RaraP11416 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC16.04■□□□□ 0.16
RaraP11416 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
RaraP11416 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
RaraP11416 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RaraP11416 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
RaraP11416 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RaraP11416 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms