Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC17.19■□□□□ 0.34
Col1a1P11087 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC17.19■□□□□ 0.34
Col1a1P11087 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC17.19■□□□□ 0.34
Col1a1P11087 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC17.19■□□□□ 0.34
Col1a1P11087 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC17.19■□□□□ 0.34
Col1a1P11087 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC17.19■□□□□ 0.34
Col1a1P11087 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Col1a1P11087 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Col1a1P11087 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col1a1P11087 Gm11425-201ENSMUST00000119608 498 ntBASIC17.18■□□□□ 0.34
Col1a1P11087 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC17.18■□□□□ 0.34
Col1a1P11087 Mir7654-201ENSMUST00000185082 70 ntBASIC17.18■□□□□ 0.34
Col1a1P11087 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC17.18■□□□□ 0.34
Col1a1P11087 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 Gm9396-201ENSMUST00000076703 567 ntBASIC17.18■□□□□ 0.34
Col1a1P11087 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Col1a1P11087 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Col1a1P11087 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC17.18■□□□□ 0.34
Col1a1P11087 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC17.18■□□□□ 0.34
Col1a1P11087 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
Col1a1P11087 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Col1a1P11087 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Col1a1P11087 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC17.18■□□□□ 0.34
Col1a1P11087 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 AC166349.1-201ENSMUST00000220866 695 ntBASIC17.18■□□□□ 0.34
Col1a1P11087 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Col1a1P11087 Gm5356-201ENSMUST00000093326 615 ntBASIC17.18■□□□□ 0.34
Col1a1P11087 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Col1a1P11087 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col1a1P11087 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col1a1P11087 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col1a1P11087 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Col1a1P11087 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC17.17■□□□□ 0.34
Col1a1P11087 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col1a1P11087 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col1a1P11087 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col1a1P11087 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col1a1P11087 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col1a1P11087 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC17.17■□□□□ 0.34
Col1a1P11087 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Col1a1P11087 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
Col1a1P11087 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Col1a1P11087 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col1a1P11087 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col1a1P11087 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Col1a1P11087 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col1a1P11087 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col1a1P11087 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col1a1P11087 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col1a1P11087 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col1a1P11087 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col1a1P11087 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
Col1a1P11087 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col1a1P11087 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col1a1P11087 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col1a1P11087 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.16■□□□□ 0.34
Col1a1P11087 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col1a1P11087 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col1a1P11087 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Col1a1P11087 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Col1a1P11087 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC17.16■□□□□ 0.34
Col1a1P11087 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col1a1P11087 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col1a1P11087 AC121598.1-201ENSMUST00000228224 1019 ntBASIC17.16■□□□□ 0.34
Col1a1P11087 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms