Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col3a1P08121 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC17.56■□□□□ 0.4
Col3a1P08121 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col3a1P08121 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC17.56■□□□□ 0.4
Col3a1P08121 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Col3a1P08121 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col3a1P08121 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC17.56■□□□□ 0.4
Col3a1P08121 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC17.56■□□□□ 0.4
Col3a1P08121 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
Col3a1P08121 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Col3a1P08121 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Col3a1P08121 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC17.55■□□□□ 0.4
Col3a1P08121 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Col3a1P08121 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC17.55■□□□□ 0.4
Col3a1P08121 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col3a1P08121 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Col3a1P08121 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC17.54■□□□□ 0.4
Col3a1P08121 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC17.54■□□□□ 0.4
Col3a1P08121 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
Col3a1P08121 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Col3a1P08121 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC17.54■□□□□ 0.4
Col3a1P08121 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Col3a1P08121 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Gm9867-201ENSMUST00000192212 2647 ntBASIC17.54■□□□□ 0.4
Col3a1P08121 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC17.54■□□□□ 0.4
Col3a1P08121 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col3a1P08121 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col3a1P08121 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col3a1P08121 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col3a1P08121 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC17.53■□□□□ 0.4
Col3a1P08121 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
Col3a1P08121 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col3a1P08121 Gm9252-201ENSMUST00000172364 1602 ntBASIC17.53■□□□□ 0.4
Col3a1P08121 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col3a1P08121 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col3a1P08121 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Col3a1P08121 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC17.53■□□□□ 0.4
Col3a1P08121 AC154412.1-201ENSMUST00000226540 2786 ntBASIC17.53■□□□□ 0.4
Col3a1P08121 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC17.53■□□□□ 0.4
Col3a1P08121 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC17.53■□□□□ 0.4
Col3a1P08121 Gm21854-201ENSMUST00000179901 471 ntBASIC17.53■□□□□ 0.4
Col3a1P08121 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col3a1P08121 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Col3a1P08121 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Col3a1P08121 Syt7-205ENSMUST00000224135 1557 ntBASIC17.53■□□□□ 0.4
Col3a1P08121 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col3a1P08121 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Col3a1P08121 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC17.53■□□□□ 0.4
Col3a1P08121 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col3a1P08121 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col3a1P08121 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col3a1P08121 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col3a1P08121 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col3a1P08121 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC17.52■□□□□ 0.4
Col3a1P08121 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col3a1P08121 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC17.52■□□□□ 0.4
Col3a1P08121 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col3a1P08121 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Col3a1P08121 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col3a1P08121 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC17.52■□□□□ 0.4
Col3a1P08121 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Col3a1P08121 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC17.52■□□□□ 0.4
Col3a1P08121 AC121598.1-201ENSMUST00000228224 1019 ntBASIC17.52■□□□□ 0.4
Col3a1P08121 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col3a1P08121 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms