Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC12.32□□□□□ -0.44
Hmgb3O54879 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Mir5130-201ENSMUST00000175160 84 ntBASIC12.32□□□□□ -0.44
Hmgb3O54879 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 AC114585.2-202ENSMUST00000228094 426 ntBASIC12.32□□□□□ -0.44
Hmgb3O54879 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Hmgb3O54879 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC12.32□□□□□ -0.44
Hmgb3O54879 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Hmgb3O54879 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Hmgb3O54879 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Hmgb3O54879 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Hmgb3O54879 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC12.31□□□□□ -0.44
Hmgb3O54879 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC12.31□□□□□ -0.44
Hmgb3O54879 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Hmgb3O54879 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC12.31□□□□□ -0.44
Hmgb3O54879 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC12.31□□□□□ -0.44
Hmgb3O54879 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Hmgb3O54879 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC12.31□□□□□ -0.44
Hmgb3O54879 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Hmgb3O54879 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hmgb3O54879 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Hmgb3O54879 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC12.3□□□□□ -0.44
Hmgb3O54879 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Hmgb3O54879 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC12.3□□□□□ -0.44
Hmgb3O54879 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC12.3□□□□□ -0.44
Hmgb3O54879 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC12.3□□□□□ -0.44
Hmgb3O54879 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC12.3□□□□□ -0.44
Hmgb3O54879 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC12.3□□□□□ -0.44
Hmgb3O54879 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC12.3□□□□□ -0.44
Hmgb3O54879 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Gm38318-201ENSMUST00000195769 1706 ntBASIC12.3□□□□□ -0.44
Hmgb3O54879 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Srgap3-202ENSMUST00000088373 8887 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
Hmgb3O54879 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Hmgb3O54879 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Hmgb3O54879 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC12.3□□□□□ -0.44
Hmgb3O54879 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Hmgb3O54879 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Hmgb3O54879 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC12.29□□□□□ -0.44
Hmgb3O54879 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Gm8520-201ENSMUST00000186517 868 ntBASIC12.29□□□□□ -0.44
Hmgb3O54879 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms