Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Chd3B1AR17 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Chd3B1AR17 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Chd3B1AR17 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Chd3B1AR17 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Chd3B1AR17 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Chd3B1AR17 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Chd3B1AR17 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Chd3B1AR17 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC14.54□□□□□ -0.08
Chd3B1AR17 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC14.54□□□□□ -0.08
Chd3B1AR17 Gm28630-201ENSMUST00000187806 498 ntBASIC14.54□□□□□ -0.08
Chd3B1AR17 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Gm8242-201ENSMUST00000193029 1420 ntBASIC14.54□□□□□ -0.08
Chd3B1AR17 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Chd3B1AR17 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Chd3B1AR17 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC14.54□□□□□ -0.08
Chd3B1AR17 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC14.54□□□□□ -0.08
Chd3B1AR17 Gm15483-201ENSMUST00000120338 456 ntBASIC14.54□□□□□ -0.08
Chd3B1AR17 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC14.54□□□□□ -0.08
Chd3B1AR17 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC14.54□□□□□ -0.08
Chd3B1AR17 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Chd3B1AR17 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Chd3B1AR17 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Chd3B1AR17 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chd3B1AR17 Tcf21-202ENSMUST00000218002 1788 ntBASIC14.53□□□□□ -0.08
Chd3B1AR17 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Chd3B1AR17 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chd3B1AR17 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chd3B1AR17 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC14.53□□□□□ -0.08
Chd3B1AR17 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chd3B1AR17 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Chd3B1AR17 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Chd3B1AR17 Gm27680-201ENSMUST00000184192 160 ntBASIC14.53□□□□□ -0.08
Chd3B1AR17 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Chd3B1AR17 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chd3B1AR17 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chd3B1AR17 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chd3B1AR17 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chd3B1AR17 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Chd3B1AR17 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chd3B1AR17 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chd3B1AR17 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chd3B1AR17 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chd3B1AR17 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Chd3B1AR17 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC14.53□□□□□ -0.08
Chd3B1AR17 Gm15593-201ENSMUST00000122085 1008 ntBASIC14.53□□□□□ -0.08
Chd3B1AR17 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Chd3B1AR17 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chd3B1AR17 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC14.53□□□□□ -0.08
Chd3B1AR17 Gm10313-201ENSMUST00000095320 1002 ntBASIC14.53□□□□□ -0.08
Chd3B1AR17 Mxra8os-201ENSMUST00000097740 687 ntBASIC14.53□□□□□ -0.08
Chd3B1AR17 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC14.53□□□□□ -0.08
Chd3B1AR17 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Chd3B1AR17 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC14.52□□□□□ -0.08
Chd3B1AR17 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Chd3B1AR17 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Chd3B1AR17 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Chd3B1AR17 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Chd3B1AR17 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC14.52□□□□□ -0.08
Chd3B1AR17 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Chd3B1AR17 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Chd3B1AR17 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Chd3B1AR17 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.08
Chd3B1AR17 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Chd3B1AR17 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Chd3B1AR17 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.09
Chd3B1AR17 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Gm23547-201ENSMUST00000158210 271 ntBASIC14.52□□□□□ -0.09
Chd3B1AR17 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Chd3B1AR17 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Gm42632-201ENSMUST00000201707 2411 ntBASIC14.52□□□□□ -0.09
Chd3B1AR17 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms