Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim3Q9R1R2 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC20.8■□□□□ 0.92
Trim3Q9R1R2 AC122317.2-201ENSMUST00000218708 1248 ntBASIC20.8■□□□□ 0.92
Trim3Q9R1R2 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim3Q9R1R2 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim3Q9R1R2 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim3Q9R1R2 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim3Q9R1R2 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Trim3Q9R1R2 Gm9806-201ENSMUST00000051080 552 ntBASIC20.79■□□□□ 0.92
Trim3Q9R1R2 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim3Q9R1R2 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim3Q9R1R2 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim3Q9R1R2 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trim3Q9R1R2 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim3Q9R1R2 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC20.78■□□□□ 0.92
Trim3Q9R1R2 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim3Q9R1R2 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim3Q9R1R2 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim3Q9R1R2 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim3Q9R1R2 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.77■□□□□ 0.92
Trim3Q9R1R2 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Trim3Q9R1R2 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Trim3Q9R1R2 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Trim3Q9R1R2 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC20.77■□□□□ 0.92
Trim3Q9R1R2 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Trim3Q9R1R2 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim3Q9R1R2 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Trim3Q9R1R2 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim3Q9R1R2 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim3Q9R1R2 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim3Q9R1R2 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC20.75■□□□□ 0.91
Trim3Q9R1R2 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trim3Q9R1R2 Gm11687-201ENSMUST00000118911 886 ntBASIC20.75■□□□□ 0.91
Trim3Q9R1R2 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Trim3Q9R1R2 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trim3Q9R1R2 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim3Q9R1R2 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim3Q9R1R2 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim3Q9R1R2 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Trim3Q9R1R2 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Trim3Q9R1R2 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim3Q9R1R2 Gm16437-201ENSMUST00000025669 507 ntBASIC20.74■□□□□ 0.91
Trim3Q9R1R2 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim3Q9R1R2 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim3Q9R1R2 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Trim3Q9R1R2 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim3Q9R1R2 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim3Q9R1R2 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim3Q9R1R2 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim3Q9R1R2 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim3Q9R1R2 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim3Q9R1R2 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim3Q9R1R2 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.72■□□□□ 0.91
Trim3Q9R1R2 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Trim3Q9R1R2 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.71■□□□□ 0.91
Trim3Q9R1R2 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.71■□□□□ 0.91
Trim3Q9R1R2 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim3Q9R1R2 AC153911.1-201ENSMUST00000220378 758 ntBASIC20.71■□□□□ 0.91
Trim3Q9R1R2 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim3Q9R1R2 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trim3Q9R1R2 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim3Q9R1R2 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim3Q9R1R2 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Trim3Q9R1R2 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim3Q9R1R2 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim3Q9R1R2 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim3Q9R1R2 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Trim3Q9R1R2 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Trim3Q9R1R2 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Trim3Q9R1R2 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Trim3Q9R1R2 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim3Q9R1R2 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim3Q9R1R2 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim3Q9R1R2 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim3Q9R1R2 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC20.67■□□□□ 0.9
Trim3Q9R1R2 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim3Q9R1R2 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim3Q9R1R2 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Trim3Q9R1R2 Gm9910-201ENSMUST00000195385 1550 ntBASIC20.67■□□□□ 0.9
Trim3Q9R1R2 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim3Q9R1R2 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim3Q9R1R2 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Trim3Q9R1R2 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim3Q9R1R2 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim3Q9R1R2 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim3Q9R1R2 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim3Q9R1R2 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.65■□□□□ 0.9
Trim3Q9R1R2 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim3Q9R1R2 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim3Q9R1R2 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim3Q9R1R2 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim3Q9R1R2 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC20.64■□□□□ 0.9
Trim3Q9R1R2 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trim3Q9R1R2 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trim3Q9R1R2 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
Trim3Q9R1R2 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Trim3Q9R1R2 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Trim3Q9R1R2 Terc-201ENSMUST00000082862 423 ntBASIC20.64■□□□□ 0.89
Trim3Q9R1R2 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Trim3Q9R1R2 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms