Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Nsd1-203ENSMUST00000224156 1149 ntBASIC31.14■■■□□ 2.58
Usp40Q8BWR4 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC31.14■■■□□ 2.58
Usp40Q8BWR4 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Usp40Q8BWR4 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Usp40Q8BWR4 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
Usp40Q8BWR4 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Usp40Q8BWR4 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC31.12■■■□□ 2.57
Usp40Q8BWR4 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Usp40Q8BWR4 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC31.12■■■□□ 2.57
Usp40Q8BWR4 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Usp40Q8BWR4 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC31.11■■■□□ 2.57
Usp40Q8BWR4 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Usp40Q8BWR4 Gm7199-201ENSMUST00000118327 1485 ntBASIC31.11■■■□□ 2.57
Usp40Q8BWR4 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Usp40Q8BWR4 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC31.1■■■□□ 2.57
Usp40Q8BWR4 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Usp40Q8BWR4 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Usp40Q8BWR4 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Usp40Q8BWR4 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC31.09■■■□□ 2.57
Usp40Q8BWR4 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
Usp40Q8BWR4 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC31.09■■■□□ 2.57
Usp40Q8BWR4 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC31.09■■■□□ 2.57
Usp40Q8BWR4 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC31.09■■■□□ 2.57
Usp40Q8BWR4 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
Usp40Q8BWR4 Gm15546-201ENSMUST00000122095 826 ntBASIC31.08■■■□□ 2.57
Usp40Q8BWR4 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Usp40Q8BWR4 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
Usp40Q8BWR4 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC31.07■■■□□ 2.56
Usp40Q8BWR4 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
Usp40Q8BWR4 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Usp40Q8BWR4 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC31.07■■■□□ 2.56
Usp40Q8BWR4 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Usp40Q8BWR4 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Usp40Q8BWR4 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
Usp40Q8BWR4 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC31.06■■■□□ 2.56
Usp40Q8BWR4 Gm43566-201ENSMUST00000196851 808 ntBASIC31.06■■■□□ 2.56
Usp40Q8BWR4 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC31.06■■■□□ 2.56
Usp40Q8BWR4 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC31.06■■■□□ 2.56
Usp40Q8BWR4 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Usp40Q8BWR4 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC31.05■■■□□ 2.56
Usp40Q8BWR4 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Usp40Q8BWR4 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Usp40Q8BWR4 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC31.04■■■□□ 2.56
Usp40Q8BWR4 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC31.04■■■□□ 2.56
Usp40Q8BWR4 Gm5522-201ENSMUST00000189483 1242 ntBASIC31.04■■■□□ 2.56
Usp40Q8BWR4 Gm45444-201ENSMUST00000211394 898 ntBASIC31.04■■■□□ 2.56
Usp40Q8BWR4 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Usp40Q8BWR4 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
Usp40Q8BWR4 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Usp40Q8BWR4 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
Usp40Q8BWR4 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Usp40Q8BWR4 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC31.02■■■□□ 2.56
Usp40Q8BWR4 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC31.01■■■□□ 2.55
Usp40Q8BWR4 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
Usp40Q8BWR4 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
Usp40Q8BWR4 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC31■■■□□ 2.55
Usp40Q8BWR4 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Usp40Q8BWR4 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC30.98■■■□□ 2.55
Usp40Q8BWR4 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC30.98■■■□□ 2.55
Usp40Q8BWR4 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Usp40Q8BWR4 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC30.97■■■□□ 2.55
Usp40Q8BWR4 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Usp40Q8BWR4 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Usp40Q8BWR4 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC30.97■■■□□ 2.55
Usp40Q8BWR4 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC30.97■■■□□ 2.55
Usp40Q8BWR4 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
Usp40Q8BWR4 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC30.96■■■□□ 2.55
Usp40Q8BWR4 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC30.95■■■□□ 2.55
Usp40Q8BWR4 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
Usp40Q8BWR4 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC30.95■■■□□ 2.55
Usp40Q8BWR4 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.55
Usp40Q8BWR4 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC30.95■■■□□ 2.54
Usp40Q8BWR4 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC30.94■■■□□ 2.54
Usp40Q8BWR4 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
Usp40Q8BWR4 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC30.94■■■□□ 2.54
Usp40Q8BWR4 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Usp40Q8BWR4 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC30.94■■■□□ 2.54
Usp40Q8BWR4 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC30.94■■■□□ 2.54
Usp40Q8BWR4 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC30.94■■■□□ 2.54
Usp40Q8BWR4 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC30.94■■■□□ 2.54
Usp40Q8BWR4 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Usp40Q8BWR4 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC30.94■■■□□ 2.54
Usp40Q8BWR4 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Usp40Q8BWR4 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Usp40Q8BWR4 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC30.93■■■□□ 2.54
Usp40Q8BWR4 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Usp40Q8BWR4 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC30.93■■■□□ 2.54
Usp40Q8BWR4 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
Usp40Q8BWR4 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC30.93■■■□□ 2.54
Usp40Q8BWR4 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Usp40Q8BWR4 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Usp40Q8BWR4 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Usp40Q8BWR4 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
Usp40Q8BWR4 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
Usp40Q8BWR4 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Usp40Q8BWR4 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC30.91■■■□□ 2.54
Usp40Q8BWR4 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC30.91■■■□□ 2.54
Usp40Q8BWR4 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
Usp40Q8BWR4 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC30.91■■■□□ 2.54
Usp40Q8BWR4 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms