Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
ShhQ62226 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC20.66■□□□□ 0.9
ShhQ62226 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ShhQ62226 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
ShhQ62226 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ShhQ62226 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ShhQ62226 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC20.65■□□□□ 0.9
ShhQ62226 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ShhQ62226 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.65■□□□□ 0.9
ShhQ62226 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ShhQ62226 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
ShhQ62226 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
ShhQ62226 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
ShhQ62226 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ShhQ62226 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ShhQ62226 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ShhQ62226 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC20.62■□□□□ 0.89
ShhQ62226 AC093043.1-201ENSMUST00000226700 898 ntBASIC20.62■□□□□ 0.89
ShhQ62226 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ShhQ62226 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
ShhQ62226 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ShhQ62226 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
ShhQ62226 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ShhQ62226 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ShhQ62226 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
ShhQ62226 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
ShhQ62226 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
ShhQ62226 Rps24-207ENSMUST00000224568 714 ntBASIC20.61■□□□□ 0.89
ShhQ62226 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ShhQ62226 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
ShhQ62226 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ShhQ62226 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ShhQ62226 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC20.6■□□□□ 0.89
ShhQ62226 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ShhQ62226 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
ShhQ62226 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ShhQ62226 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ShhQ62226 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
ShhQ62226 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.58■□□□□ 0.88
ShhQ62226 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ShhQ62226 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ShhQ62226 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
ShhQ62226 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
ShhQ62226 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ShhQ62226 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
ShhQ62226 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ShhQ62226 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
ShhQ62226 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.56■□□□□ 0.88
ShhQ62226 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
ShhQ62226 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
ShhQ62226 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ShhQ62226 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ShhQ62226 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ShhQ62226 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ShhQ62226 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ShhQ62226 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ShhQ62226 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ShhQ62226 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ShhQ62226 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ShhQ62226 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC20.54■□□□□ 0.88
ShhQ62226 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.54■□□□□ 0.88
ShhQ62226 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ShhQ62226 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ShhQ62226 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC20.53■□□□□ 0.88
ShhQ62226 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC20.53■□□□□ 0.88
ShhQ62226 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ShhQ62226 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ShhQ62226 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ShhQ62226 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ShhQ62226 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC20.52■□□□□ 0.88
ShhQ62226 Gm15820-201ENSMUST00000201566 728 ntBASIC20.52■□□□□ 0.88
ShhQ62226 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ShhQ62226 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.52■□□□□ 0.88
ShhQ62226 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ShhQ62226 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
ShhQ62226 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ShhQ62226 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
ShhQ62226 Gm9812-201ENSMUST00000061934 968 ntBASIC20.51■□□□□ 0.87
ShhQ62226 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ShhQ62226 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ShhQ62226 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
ShhQ62226 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
ShhQ62226 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC20.49■□□□□ 0.87
ShhQ62226 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC20.49■□□□□ 0.87
ShhQ62226 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
ShhQ62226 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ShhQ62226 AC122317.2-201ENSMUST00000218708 1248 ntBASIC20.48■□□□□ 0.87
ShhQ62226 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ShhQ62226 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ShhQ62226 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ShhQ62226 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
ShhQ62226 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC20.47■□□□□ 0.87
ShhQ62226 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC20.47■□□□□ 0.87
ShhQ62226 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ShhQ62226 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC20.47■□□□□ 0.87
ShhQ62226 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ShhQ62226 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ShhQ62226 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
ShhQ62226 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ShhQ62226 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms