Protein–RNA interactions for Protein: A0A075B615

Trav4n-4, T cell receptor alpha variable 4D-4 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4n-4A0A075B615 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
Trav4n-4A0A075B615 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Trav4n-4A0A075B615 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav4n-4A0A075B615 Gm27322-201ENSMUST00000184007 104 ntBASIC15.58■□□□□ 0.08
Trav4n-4A0A075B615 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC15.58■□□□□ 0.08
Trav4n-4A0A075B615 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav4n-4A0A075B615 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav4n-4A0A075B615 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav4n-4A0A075B615 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trav4n-4A0A075B615 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav4n-4A0A075B615 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Trav4n-4A0A075B615 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav4n-4A0A075B615 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Trav4n-4A0A075B615 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav4n-4A0A075B615 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav4n-4A0A075B615 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC15.56■□□□□ 0.08
Trav4n-4A0A075B615 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Trav4n-4A0A075B615 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav4n-4A0A075B615 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav4n-4A0A075B615 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav4n-4A0A075B615 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav4n-4A0A075B615 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav4n-4A0A075B615 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav4n-4A0A075B615 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trav4n-4A0A075B615 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav4n-4A0A075B615 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Trav4n-4A0A075B615 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav4n-4A0A075B615 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav4n-4A0A075B615 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav4n-4A0A075B615 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav4n-4A0A075B615 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav4n-4A0A075B615 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Trav4n-4A0A075B615 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Trav4n-4A0A075B615 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav4n-4A0A075B615 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav4n-4A0A075B615 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav4n-4A0A075B615 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav4n-4A0A075B615 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav4n-4A0A075B615 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trav4n-4A0A075B615 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trav4n-4A0A075B615 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trav4n-4A0A075B615 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav4n-4A0A075B615 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trav4n-4A0A075B615 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav4n-4A0A075B615 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav4n-4A0A075B615 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav4n-4A0A075B615 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Trav4n-4A0A075B615 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trav4n-4A0A075B615 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trav4n-4A0A075B615 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav4n-4A0A075B615 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav4n-4A0A075B615 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav4n-4A0A075B615 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
Trav4n-4A0A075B615 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav4n-4A0A075B615 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav4n-4A0A075B615 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav4n-4A0A075B615 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav4n-4A0A075B615 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav4n-4A0A075B615 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav4n-4A0A075B615 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trav4n-4A0A075B615 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC15.48■□□□□ 0.07
Trav4n-4A0A075B615 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav4n-4A0A075B615 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Trav4n-4A0A075B615 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trav4n-4A0A075B615 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav4n-4A0A075B615 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav4n-4A0A075B615 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Trav4n-4A0A075B615 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trav4n-4A0A075B615 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav4n-4A0A075B615 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav4n-4A0A075B615 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trav4n-4A0A075B615 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Trav4n-4A0A075B615 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Trav4n-4A0A075B615 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav4n-4A0A075B615 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav4n-4A0A075B615 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC15.46■□□□□ 0.07
Trav4n-4A0A075B615 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav4n-4A0A075B615 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
Trav4n-4A0A075B615 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Trav4n-4A0A075B615 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Trav4n-4A0A075B615 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trav4n-4A0A075B615 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav4n-4A0A075B615 Gm32051-202ENSMUST00000197905 2385 ntBASIC15.45■□□□□ 0.06
Trav4n-4A0A075B615 Gm17082-201ENSMUST00000166043 1091 ntBASIC15.45■□□□□ 0.06
Trav4n-4A0A075B615 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Trav4n-4A0A075B615 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC15.45■□□□□ 0.06
Trav4n-4A0A075B615 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav4n-4A0A075B615 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trav4n-4A0A075B615 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trav4n-4A0A075B615 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trav4n-4A0A075B615 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC15.44■□□□□ 0.06
Trav4n-4A0A075B615 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trav4n-4A0A075B615 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trav4n-4A0A075B615 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Trav4n-4A0A075B615 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Trav4n-4A0A075B615 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trav4n-4A0A075B615 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trav4n-4A0A075B615 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trav4n-4A0A075B615 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trav4n-4A0A075B615 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms