Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Gm27300-201ENSMUST00000184085 97 ntBASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Gm27335-201ENSMUST00000184758 97 ntBASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC16.37■□□□□ 0.21
Prpf40aQ9R1C7 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Gm6443-201ENSMUST00000203599 874 ntBASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Gm18206-201ENSMUST00000207027 926 ntBASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Camk2g-217ENSMUST00000226630 1937 ntBASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Gm13294-201ENSMUST00000121757 1330 ntBASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Prpf40aQ9R1C7 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Gm18246-201ENSMUST00000221023 728 ntBASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Rpl7-201ENSMUST00000058437 1163 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 AC119177.1-201ENSMUST00000227647 1332 ntBASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Gm14780-201ENSMUST00000118387 2737 ntBASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Prpf40aQ9R1C7 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Gm37305-201ENSMUST00000195714 4279 ntBASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC16.34■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms