Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Scn4aQ9ER60 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Scn4aQ9ER60 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Scn4aQ9ER60 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Scn4aQ9ER60 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Scn4aQ9ER60 Gm10313-201ENSMUST00000095320 1002 ntBASIC19.94■□□□□ 0.78
Scn4aQ9ER60 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Scn4aQ9ER60 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Scn4aQ9ER60 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Scn4aQ9ER60 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Scn4aQ9ER60 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Scn4aQ9ER60 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Scn4aQ9ER60 Gm14381-201ENSMUST00000122105 414 ntBASIC19.93■□□□□ 0.78
Scn4aQ9ER60 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC19.93■□□□□ 0.78
Scn4aQ9ER60 Gm5637-201ENSMUST00000153890 1119 ntBASIC19.93■□□□□ 0.78
Scn4aQ9ER60 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Scn4aQ9ER60 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Scn4aQ9ER60 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Scn4aQ9ER60 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC19.93■□□□□ 0.78
Scn4aQ9ER60 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Gm10275-202ENSMUST00000168697 495 ntBASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 CT009718.3-201ENSMUST00000221116 367 ntBASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Gm10275-201ENSMUST00000092620 635 ntBASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Gm8242-201ENSMUST00000193029 1420 ntBASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Gm9726-201ENSMUST00000180321 678 ntBASIC19.92■□□□□ 0.78
Scn4aQ9ER60 AC132384.14-201ENSMUST00000219346 1147 ntBASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn4aQ9ER60 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Scn4aQ9ER60 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC19.91■□□□□ 0.78
Scn4aQ9ER60 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Scn4aQ9ER60 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Scn4aQ9ER60 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC19.91■□□□□ 0.78
Scn4aQ9ER60 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Scn4aQ9ER60 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Scn4aQ9ER60 Gm12485-201ENSMUST00000119641 291 ntBASIC19.91■□□□□ 0.78
Scn4aQ9ER60 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC19.91■□□□□ 0.78
Scn4aQ9ER60 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC19.91■□□□□ 0.78
Scn4aQ9ER60 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Scn4aQ9ER60 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Scn4aQ9ER60 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Scn4aQ9ER60 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Scn4aQ9ER60 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Scn4aQ9ER60 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Scn4aQ9ER60 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Scn4aQ9ER60 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC19.91■□□□□ 0.78
Scn4aQ9ER60 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 D8Ertd738e-201ENSMUST00000019506 616 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Gm8706-201ENSMUST00000197372 1491 ntBASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Gm4819-201ENSMUST00000182170 1009 ntBASIC19.9■□□□□ 0.78
Scn4aQ9ER60 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn4aQ9ER60 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
Scn4aQ9ER60 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
Scn4aQ9ER60 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Scn4aQ9ER60 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Scn4aQ9ER60 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
Scn4aQ9ER60 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
Scn4aQ9ER60 Gm10156-201ENSMUST00000122364 462 ntBASIC19.89■□□□□ 0.77
Scn4aQ9ER60 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC19.89■□□□□ 0.77
Scn4aQ9ER60 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Scn4aQ9ER60 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Scn4aQ9ER60 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms