Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nup88Q8CEC0 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 AC159295.1-201ENSMUST00000225326 940 ntBASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Gm38058-201ENSMUST00000194323 4368 ntBASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nup88Q8CEC0 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Gm4913-201ENSMUST00000117075 1290 ntBASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Gm12134-201ENSMUST00000122109 520 ntBASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Gm7229-201ENSMUST00000214719 1007 ntBASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 AC147366.1-201ENSMUST00000227671 852 ntBASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Gm15500-202ENSMUST00000071641 1019 ntBASIC17.55■□□□□ 0.4
Nup88Q8CEC0 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nup88Q8CEC0 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Gm11185-201ENSMUST00000117732 1007 ntBASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Gm37912-201ENSMUST00000191895 3076 ntBASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Nup88Q8CEC0 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Nup88Q8CEC0 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Nup88Q8CEC0 Gm5648-201ENSMUST00000122244 1587 ntBASIC17.53■□□□□ 0.4
Nup88Q8CEC0 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Nup88Q8CEC0 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC17.53■□□□□ 0.4
Nup88Q8CEC0 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms