Protein–RNA interactions for Protein: Q8CDN8

Ccdc38, Coiled-coil domain-containing protein 38, mousemouse

Predictions only

Length 563 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc38Q8CDN8 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Gm11452-201ENSMUST00000122376 690 ntBASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Carlr-201ENSMUST00000181515 2574 ntBASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc38Q8CDN8 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Mir8098-201ENSMUST00000184011 137 ntBASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Gm18246-201ENSMUST00000221023 728 ntBASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc38Q8CDN8 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Gm12620-201ENSMUST00000119791 1986 ntBASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Gm12612-201ENSMUST00000140182 1986 ntBASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Gm43509-201ENSMUST00000196551 2594 ntBASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Gm5366-201ENSMUST00000215494 1338 ntBASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Gm37305-201ENSMUST00000195714 4279 ntBASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Gm42632-201ENSMUST00000201707 2411 ntBASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc38Q8CDN8 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc38Q8CDN8 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc38Q8CDN8 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc38Q8CDN8 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc38Q8CDN8 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc38Q8CDN8 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Ccdc38Q8CDN8 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc38Q8CDN8 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc38Q8CDN8 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc38Q8CDN8 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC16.52■□□□□ 0.24
Ccdc38Q8CDN8 CT010506.4-201ENSMUST00000225457 351 ntBASIC16.52■□□□□ 0.24
Ccdc38Q8CDN8 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc38Q8CDN8 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc38Q8CDN8 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc38Q8CDN8 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc38Q8CDN8 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc38Q8CDN8 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ccdc38Q8CDN8 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ccdc38Q8CDN8 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ccdc38Q8CDN8 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ccdc38Q8CDN8 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC16.52■□□□□ 0.23
Ccdc38Q8CDN8 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC16.52■□□□□ 0.23
Ccdc38Q8CDN8 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms