Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC20.94■□□□□ 0.94
Usp47Q8BY87 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp47Q8BY87 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Usp47Q8BY87 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Usp47Q8BY87 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Usp47Q8BY87 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Usp47Q8BY87 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp47Q8BY87 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp47Q8BY87 Gm45212-201ENSMUST00000205831 3403 ntBASIC20.93■□□□□ 0.94
Usp47Q8BY87 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC20.93■□□□□ 0.94
Usp47Q8BY87 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC20.93■□□□□ 0.94
Usp47Q8BY87 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp47Q8BY87 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Usp47Q8BY87 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp47Q8BY87 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp47Q8BY87 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC20.93■□□□□ 0.94
Usp47Q8BY87 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC20.93■□□□□ 0.94
Usp47Q8BY87 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Usp47Q8BY87 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Usp47Q8BY87 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Usp47Q8BY87 Gm27618-201ENSMUST00000183671 60 ntBASIC20.93■□□□□ 0.94
Usp47Q8BY87 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Usp47Q8BY87 AC124732.2-201ENSMUST00000221977 316 ntBASIC20.93■□□□□ 0.94
Usp47Q8BY87 Carlr-201ENSMUST00000181515 2574 ntBASIC20.93■□□□□ 0.94
Usp47Q8BY87 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp47Q8BY87 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC20.93■□□□□ 0.94
Usp47Q8BY87 Gm42632-201ENSMUST00000201707 2411 ntBASIC20.93■□□□□ 0.94
Usp47Q8BY87 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Gm6539-201ENSMUST00000119157 1064 ntBASIC20.92■□□□□ 0.94
Usp47Q8BY87 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Gm5357-201ENSMUST00000212720 1924 ntBASIC20.92■□□□□ 0.94
Usp47Q8BY87 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp47Q8BY87 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
Usp47Q8BY87 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm29310-201ENSMUST00000185468 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm21825-201ENSMUST00000185728 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm29109-201ENSMUST00000185895 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm21896-201ENSMUST00000186520 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm21873-201ENSMUST00000186728 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm21794-201ENSMUST00000187056 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm21880-201ENSMUST00000187275 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm21826-201ENSMUST00000187451 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm21198-201ENSMUST00000188393 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm21749-201ENSMUST00000189343 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm21901-201ENSMUST00000189568 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm29424-201ENSMUST00000189716 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm28599-201ENSMUST00000189838 694 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm21867-201ENSMUST00000189917 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm29269-201ENSMUST00000190087 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm21722-201ENSMUST00000190153 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm28423-201ENSMUST00000190701 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm21899-201ENSMUST00000190745 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm21910-201ENSMUST00000191163 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm21849-201ENSMUST00000191571 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm28678-201ENSMUST00000191593 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm20910-201ENSMUST00000193268 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm21871-201ENSMUST00000194621 696 ntBASIC20.91■□□□□ 0.94
Usp47Q8BY87 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp47Q8BY87 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp47Q8BY87 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Usp47Q8BY87 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp47Q8BY87 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp47Q8BY87 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp47Q8BY87 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC20.9■□□□□ 0.94
Usp47Q8BY87 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC20.9■□□□□ 0.94
Usp47Q8BY87 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Usp47Q8BY87 Gm27622-201ENSMUST00000183779 60 ntBASIC20.9■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms