Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim56Q80VI1 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim56Q80VI1 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Trim56Q80VI1 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC17.54■□□□□ 0.4
Trim56Q80VI1 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
Trim56Q80VI1 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
Trim56Q80VI1 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC17.54■□□□□ 0.4
Trim56Q80VI1 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim56Q80VI1 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim56Q80VI1 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Trim56Q80VI1 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC17.54■□□□□ 0.4
Trim56Q80VI1 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Trim56Q80VI1 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim56Q80VI1 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim56Q80VI1 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Gm43474-201ENSMUST00000196415 774 ntBASIC17.53■□□□□ 0.4
Trim56Q80VI1 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC17.53■□□□□ 0.4
Trim56Q80VI1 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC17.53■□□□□ 0.4
Trim56Q80VI1 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Gm8749-201ENSMUST00000117737 331 ntBASIC17.52■□□□□ 0.4
Trim56Q80VI1 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC17.52■□□□□ 0.4
Trim56Q80VI1 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Gm4691-201ENSMUST00000182339 1000 ntBASIC17.52■□□□□ 0.4
Trim56Q80VI1 Gm2451-201ENSMUST00000199447 999 ntBASIC17.52■□□□□ 0.4
Trim56Q80VI1 Gm10290-201ENSMUST00000200451 999 ntBASIC17.52■□□□□ 0.4
Trim56Q80VI1 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim56Q80VI1 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim56Q80VI1 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Trim56Q80VI1 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Trim56Q80VI1 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim56Q80VI1 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Trim56Q80VI1 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim56Q80VI1 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim56Q80VI1 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Trim56Q80VI1 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim56Q80VI1 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim56Q80VI1 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim56Q80VI1 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim56Q80VI1 Gm5357-201ENSMUST00000212720 1924 ntBASIC17.51■□□□□ 0.39
Trim56Q80VI1 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim56Q80VI1 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim56Q80VI1 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim56Q80VI1 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC17.51■□□□□ 0.39
Trim56Q80VI1 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC17.51■□□□□ 0.39
Trim56Q80VI1 Gm43125-201ENSMUST00000201724 730 ntBASIC17.51■□□□□ 0.39
Trim56Q80VI1 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
Trim56Q80VI1 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim56Q80VI1 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim56Q80VI1 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Trim56Q80VI1 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim56Q80VI1 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim56Q80VI1 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim56Q80VI1 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim56Q80VI1 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
Trim56Q80VI1 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim56Q80VI1 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Gm37728-201ENSMUST00000195025 2292 ntBASIC17.5■□□□□ 0.39
Trim56Q80VI1 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms