Protein–RNA interactions for Protein: Q6IFX4

Krt39, Keratin, type I cytoskeletal 39, mousemouse

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Krt39Q6IFX4 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Gm4535-201ENSMUST00000182274 558 ntBASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Gm13830-205ENSMUST00000201195 1155 ntBASIC16.46■□□□□ 0.23
Krt39Q6IFX4 AC159301.1-201ENSMUST00000225130 1182 ntBASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Gm10355-201ENSMUST00000097146 517 ntBASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Krt39Q6IFX4 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Krt39Q6IFX4 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Krt39Q6IFX4 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC16.45■□□□□ 0.22
Krt39Q6IFX4 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Gm44357-201ENSMUST00000195897 142 ntBASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Gm19658-201ENSMUST00000196231 138 ntBASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Gm44367-201ENSMUST00000196836 138 ntBASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Gm44350-201ENSMUST00000197197 138 ntBASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Gm44390-201ENSMUST00000197533 144 ntBASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Gm44313-201ENSMUST00000198018 138 ntBASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Gm44486-201ENSMUST00000198508 138 ntBASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Gm44314-201ENSMUST00000199263 138 ntBASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Gm44394-201ENSMUST00000199558 138 ntBASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Gm44484-201ENSMUST00000199873 138 ntBASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Gm44466-201ENSMUST00000200264 138 ntBASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Gm44359-201ENSMUST00000200671 138 ntBASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Krt39Q6IFX4 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Gm13418-201ENSMUST00000119097 944 ntBASIC16.44■□□□□ 0.22
Krt39Q6IFX4 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Krt39Q6IFX4 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Krt39Q6IFX4 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
Krt39Q6IFX4 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Krt39Q6IFX4 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Krt39Q6IFX4 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms