Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
ShhQ62226 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Gm13332-201ENSMUST00000120451 1398 ntBASIC13.89□□□□□ -0.19
ShhQ62226 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC13.89□□□□□ -0.19
ShhQ62226 Gm12428-201ENSMUST00000119844 727 ntBASIC13.89□□□□□ -0.19
ShhQ62226 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
ShhQ62226 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC13.89□□□□□ -0.19
ShhQ62226 Gm17968-201ENSMUST00000194902 784 ntBASIC13.89□□□□□ -0.19
ShhQ62226 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC13.89□□□□□ -0.19
ShhQ62226 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC13.89□□□□□ -0.19
ShhQ62226 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Tfap2a-203ENSMUST00000223869 2037 ntBASIC13.89□□□□□ -0.19
ShhQ62226 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
ShhQ62226 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
ShhQ62226 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
ShhQ62226 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC13.88□□□□□ -0.19
ShhQ62226 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
ShhQ62226 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
ShhQ62226 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
ShhQ62226 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
ShhQ62226 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ShhQ62226 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
ShhQ62226 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
ShhQ62226 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC13.88□□□□□ -0.19
ShhQ62226 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC13.88□□□□□ -0.19
ShhQ62226 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
ShhQ62226 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
ShhQ62226 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
ShhQ62226 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
ShhQ62226 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC13.88□□□□□ -0.19
ShhQ62226 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC13.88□□□□□ -0.19
ShhQ62226 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
ShhQ62226 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
ShhQ62226 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
ShhQ62226 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ShhQ62226 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
ShhQ62226 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
ShhQ62226 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ShhQ62226 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ShhQ62226 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ShhQ62226 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
ShhQ62226 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
ShhQ62226 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
ShhQ62226 Gm15358-201ENSMUST00000119249 520 ntBASIC13.87□□□□□ -0.19
ShhQ62226 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Gm22175-201ENSMUST00000175007 78 ntBASIC13.87□□□□□ -0.19
ShhQ62226 Gm27301-201ENSMUST00000184012 127 ntBASIC13.87□□□□□ -0.19
ShhQ62226 Gm27430-201ENSMUST00000184585 107 ntBASIC13.87□□□□□ -0.19
ShhQ62226 Gm44333-201ENSMUST00000197168 107 ntBASIC13.87□□□□□ -0.19
ShhQ62226 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Gm45612-201ENSMUST00000211320 160 ntBASIC13.87□□□□□ -0.19
ShhQ62226 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC13.87□□□□□ -0.19
ShhQ62226 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC13.87□□□□□ -0.19
ShhQ62226 AC158538.2-201ENSMUST00000225455 906 ntBASIC13.87□□□□□ -0.19
ShhQ62226 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
ShhQ62226 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
ShhQ62226 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ShhQ62226 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
ShhQ62226 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC13.86□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 59.9 ms