Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col11a1Q61245 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col11a1Q61245 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col11a1Q61245 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
Col11a1Q61245 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col11a1Q61245 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Col11a1Q61245 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC16.38■□□□□ 0.21
Col11a1Q61245 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
Col11a1Q61245 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Col11a1Q61245 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC16.38■□□□□ 0.21
Col11a1Q61245 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col11a1Q61245 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col11a1Q61245 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col11a1Q61245 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col11a1Q61245 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col11a1Q61245 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col11a1Q61245 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
Col11a1Q61245 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col11a1Q61245 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col11a1Q61245 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
Col11a1Q61245 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col11a1Q61245 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col11a1Q61245 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC16.38■□□□□ 0.21
Col11a1Q61245 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC16.38■□□□□ 0.21
Col11a1Q61245 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC16.38■□□□□ 0.21
Col11a1Q61245 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col11a1Q61245 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col11a1Q61245 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col11a1Q61245 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col11a1Q61245 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col11a1Q61245 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col11a1Q61245 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col11a1Q61245 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col11a1Q61245 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC16.37■□□□□ 0.21
Col11a1Q61245 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC16.37■□□□□ 0.21
Col11a1Q61245 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col11a1Q61245 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC16.37■□□□□ 0.21
Col11a1Q61245 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC16.37■□□□□ 0.21
Col11a1Q61245 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC16.37■□□□□ 0.21
Col11a1Q61245 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col11a1Q61245 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC16.37■□□□□ 0.21
Col11a1Q61245 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col11a1Q61245 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col11a1Q61245 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col11a1Q61245 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col11a1Q61245 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col11a1Q61245 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Col11a1Q61245 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC16.36■□□□□ 0.21
Col11a1Q61245 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC16.36■□□□□ 0.21
Col11a1Q61245 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Gm8652-201ENSMUST00000181363 964 ntBASIC16.36■□□□□ 0.21
Col11a1Q61245 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC16.36■□□□□ 0.21
Col11a1Q61245 AC140451.2-201ENSMUST00000228030 664 ntBASIC16.36■□□□□ 0.21
Col11a1Q61245 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
Col11a1Q61245 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col11a1Q61245 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC16.35■□□□□ 0.21
Col11a1Q61245 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col11a1Q61245 Gm14723-201ENSMUST00000118686 215 ntBASIC16.35■□□□□ 0.21
Col11a1Q61245 Gm11803-201ENSMUST00000119966 444 ntBASIC16.35■□□□□ 0.21
Col11a1Q61245 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC16.35■□□□□ 0.21
Col11a1Q61245 Gm26464-201ENSMUST00000157094 305 ntBASIC16.35■□□□□ 0.21
Col11a1Q61245 Gm24644-201ENSMUST00000157114 139 ntBASIC16.35■□□□□ 0.21
Col11a1Q61245 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
Col11a1Q61245 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC16.35■□□□□ 0.21
Col11a1Q61245 Gm19078-201ENSMUST00000206311 727 ntBASIC16.35■□□□□ 0.21
Col11a1Q61245 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col11a1Q61245 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Col11a1Q61245 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Col11a1Q61245 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col11a1Q61245 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col11a1Q61245 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col11a1Q61245 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col11a1Q61245 Gm21009-201ENSMUST00000197169 1669 ntBASIC16.35■□□□□ 0.21
Col11a1Q61245 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col11a1Q61245 AC163637.1-201ENSMUST00000215491 1894 ntBASIC16.35■□□□□ 0.21
Col11a1Q61245 Gm9252-201ENSMUST00000172364 1602 ntBASIC16.35■□□□□ 0.21
Col11a1Q61245 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col11a1Q61245 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col11a1Q61245 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col11a1Q61245 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col11a1Q61245 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms