Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Vps54Q5SPW0 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Vps54Q5SPW0 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps54Q5SPW0 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps54Q5SPW0 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps54Q5SPW0 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Gm43474-201ENSMUST00000196415 774 ntBASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Vps54Q5SPW0 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Vps54Q5SPW0 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Vps54Q5SPW0 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
Vps54Q5SPW0 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Vps54Q5SPW0 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Vps54Q5SPW0 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Vps54Q5SPW0 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Vps54Q5SPW0 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Vps54Q5SPW0 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Vps54Q5SPW0 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Vps54Q5SPW0 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps54Q5SPW0 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
Vps54Q5SPW0 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
Vps54Q5SPW0 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC17.83■□□□□ 0.44
Vps54Q5SPW0 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC17.83■□□□□ 0.44
Vps54Q5SPW0 Gm27920-201ENSMUST00000183953 96 ntBASIC17.83■□□□□ 0.44
Vps54Q5SPW0 Gm43125-201ENSMUST00000201724 730 ntBASIC17.83■□□□□ 0.44
Vps54Q5SPW0 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps54Q5SPW0 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps54Q5SPW0 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps54Q5SPW0 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps54Q5SPW0 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 Gm14701-201ENSMUST00000117156 348 ntBASIC17.82■□□□□ 0.44
Vps54Q5SPW0 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC17.82■□□□□ 0.44
Vps54Q5SPW0 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC17.82■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 60 ms