Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Gm25016-201ENSMUST00000158399 131 ntBASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Gm8349-201ENSMUST00000182720 1003 ntBASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Gm37691-201ENSMUST00000192147 2573 ntBASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 AC166574.6-201ENSMUST00000227889 1806 ntBASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 CT030684.3-201ENSMUST00000227308 2445 ntBASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 AC130713.1-201ENSMUST00000228853 1096 ntBASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Gm19863-201ENSMUST00000192480 2218 ntBASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC13.98□□□□□ -0.17
Trim40Q3UWA4 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Gm11950-201ENSMUST00000121615 838 ntBASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Gm7286-201ENSMUST00000182691 1007 ntBASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Trim40Q3UWA4 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim40Q3UWA4 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim40Q3UWA4 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim40Q3UWA4 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Trim40Q3UWA4 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim40Q3UWA4 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim40Q3UWA4 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim40Q3UWA4 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim40Q3UWA4 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim40Q3UWA4 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim40Q3UWA4 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim40Q3UWA4 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms