Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 AC164567.1-201ENSMUST00000219185 960 ntBASIC16.37■□□□□ 0.21
Hmgb1P63158 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Hmgb1P63158 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Gm10605-202ENSMUST00000183019 3198 ntBASIC16.36■□□□□ 0.21
Hmgb1P63158 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC16.36■□□□□ 0.21
Hmgb1P63158 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Hmgb1P63158 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Gm7862-201ENSMUST00000121461 292 ntBASIC16.36■□□□□ 0.21
Hmgb1P63158 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Hmgb1P63158 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Hmgb1P63158 AC147366.1-201ENSMUST00000227671 852 ntBASIC16.36■□□□□ 0.21
Hmgb1P63158 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC16.36■□□□□ 0.21
Hmgb1P63158 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 LMLN2-201ENSMUST00000224691 2342 ntAPPRIS P5 BASIC16.36■□□□□ 0.21
Hmgb1P63158 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Hmgb1P63158 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC16.36■□□□□ 0.21
Hmgb1P63158 Best4-ps-201ENSMUST00000129783 1380 ntBASIC16.36■□□□□ 0.21
Hmgb1P63158 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
Hmgb1P63158 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Hmgb1P63158 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb1P63158 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Hmgb1P63158 Gm42632-201ENSMUST00000201707 2411 ntBASIC16.35■□□□□ 0.21
Hmgb1P63158 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC16.35■□□□□ 0.21
Hmgb1P63158 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC16.35■□□□□ 0.21
Hmgb1P63158 Gm15173-201ENSMUST00000122049 433 ntBASIC16.35■□□□□ 0.21
Hmgb1P63158 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC16.35■□□□□ 0.21
Hmgb1P63158 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC16.35■□□□□ 0.21
Hmgb1P63158 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Hmgb1P63158 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Hmgb1P63158 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC16.35■□□□□ 0.21
Hmgb1P63158 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb1P63158 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Hmgb1P63158 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC16.34■□□□□ 0.21
Hmgb1P63158 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Hmgb1P63158 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Hmgb1P63158 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
Hmgb1P63158 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Hmgb1P63158 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Hmgb1P63158 Umpk-ps-201ENSMUST00000211897 827 ntBASIC16.34■□□□□ 0.21
Hmgb1P63158 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms