Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Sox3P53784 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sox3P53784 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sox3P53784 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sox3P53784 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sox3P53784 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Sox3P53784 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sox3P53784 Gm13823-201ENSMUST00000119930 345 ntBASIC14.27□□□□□ -0.13
Sox3P53784 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Sox3P53784 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Sox3P53784 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sox3P53784 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC14.27□□□□□ -0.13
Sox3P53784 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC14.27□□□□□ -0.13
Sox3P53784 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sox3P53784 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Sox3P53784 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sox3P53784 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Sox3P53784 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Sox3P53784 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sox3P53784 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
Sox3P53784 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sox3P53784 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sox3P53784 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Sox3P53784 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Sox3P53784 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sox3P53784 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Sox3P53784 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC14.26□□□□□ -0.13
Sox3P53784 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox3P53784 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox3P53784 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC14.26□□□□□ -0.13
Sox3P53784 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox3P53784 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Sox3P53784 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Sox3P53784 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Sox3P53784 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC14.26□□□□□ -0.13
Sox3P53784 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Sox3P53784 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox3P53784 Gm6226-201ENSMUST00000117765 1146 ntBASIC14.26□□□□□ -0.13
Sox3P53784 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC14.26□□□□□ -0.13
Sox3P53784 Gm5177-201ENSMUST00000183092 997 ntBASIC14.26□□□□□ -0.13
Sox3P53784 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC14.26□□□□□ -0.13
Sox3P53784 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox3P53784 Gm5628-201ENSMUST00000222318 1049 ntBASIC14.26□□□□□ -0.13
Sox3P53784 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox3P53784 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox3P53784 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox3P53784 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Sox3P53784 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox3P53784 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox3P53784 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
Sox3P53784 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Sox3P53784 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox3P53784 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Sox3P53784 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox3P53784 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 Best4-ps-201ENSMUST00000129783 1380 ntBASIC14.25□□□□□ -0.13
Sox3P53784 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Sox3P53784 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC14.25□□□□□ -0.13
Sox3P53784 Rprl2-201ENSMUST00000157150 290 ntBASIC14.25□□□□□ -0.13
Sox3P53784 Mir6404-201ENSMUST00000183699 94 ntBASIC14.25□□□□□ -0.13
Sox3P53784 Gm43125-201ENSMUST00000201724 730 ntBASIC14.25□□□□□ -0.13
Sox3P53784 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC14.25□□□□□ -0.13
Sox3P53784 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Sox3P53784 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Sox3P53784 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC14.25□□□□□ -0.13
Sox3P53784 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Sox3P53784 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 Gm37728-201ENSMUST00000195025 2292 ntBASIC14.25□□□□□ -0.13
Sox3P53784 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox3P53784 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC14.25□□□□□ -0.13
Sox3P53784 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
Sox3P53784 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Sox3P53784 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox3P53784 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Sox3P53784 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Sox3P53784 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox3P53784 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox3P53784 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox3P53784 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox3P53784 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox3P53784 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox3P53784 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox3P53784 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sox3P53784 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sox3P53784 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms