Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Cdx1P18111 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Cdx1P18111 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
Cdx1P18111 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Cdx1P18111 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Cdx1P18111 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC12.04□□□□□ -0.48
Cdx1P18111 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC12.04□□□□□ -0.48
Cdx1P18111 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC12.04□□□□□ -0.48
Cdx1P18111 AC153889.1-201ENSMUST00000219257 330 ntBASIC12.04□□□□□ -0.48
Cdx1P18111 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Cdx1P18111 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC12.04□□□□□ -0.48
Cdx1P18111 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Cdx1P18111 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Cdx1P18111 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdx1P18111 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC12.04□□□□□ -0.48
Cdx1P18111 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC12.03□□□□□ -0.48
Cdx1P18111 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
Cdx1P18111 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC12.03□□□□□ -0.48
Cdx1P18111 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Cdx1P18111 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC12.03□□□□□ -0.48
Cdx1P18111 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
Cdx1P18111 AC124569.2-201ENSMUST00000225998 818 ntBASIC12.03□□□□□ -0.48
Cdx1P18111 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Cdx1P18111 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdx1P18111 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC12.02□□□□□ -0.48
Cdx1P18111 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Cdx1P18111 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Cdx1P18111 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Cdx1P18111 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Cdx1P18111 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Cdx1P18111 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.49
Cdx1P18111 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Gm12895-201ENSMUST00000122214 226 ntBASIC12.02□□□□□ -0.49
Cdx1P18111 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC12.02□□□□□ -0.49
Cdx1P18111 Mir8098-201ENSMUST00000184011 137 ntBASIC12.02□□□□□ -0.49
Cdx1P18111 Gm27459-201ENSMUST00000184860 107 ntBASIC12.02□□□□□ -0.49
Cdx1P18111 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC12.02□□□□□ -0.49
Cdx1P18111 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC12.02□□□□□ -0.49
Cdx1P18111 AC125350.1-201ENSMUST00000225115 903 ntBASIC12.02□□□□□ -0.49
Cdx1P18111 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Cdx1P18111 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms