Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Hmgb3O54879 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Zkscan4-202ENSMUST00000225845 1506 ntBASIC12.34□□□□□ -0.43
Hmgb3O54879 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Hmgb3O54879 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC12.34□□□□□ -0.43
Hmgb3O54879 Gm37722-201ENSMUST00000193757 208 ntBASIC12.34□□□□□ -0.43
Hmgb3O54879 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC12.34□□□□□ -0.43
Hmgb3O54879 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC12.34□□□□□ -0.43
Hmgb3O54879 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC12.34□□□□□ -0.43
Hmgb3O54879 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC12.34□□□□□ -0.43
Hmgb3O54879 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Hmgb3O54879 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Gm13337-201ENSMUST00000119183 1594 ntBASIC12.34□□□□□ -0.43
Hmgb3O54879 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC12.34□□□□□ -0.43
Hmgb3O54879 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Hmgb3O54879 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Hmgb3O54879 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Hmgb3O54879 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Hmgb3O54879 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Hmgb3O54879 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.44
Hmgb3O54879 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Hmgb3O54879 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC12.33□□□□□ -0.44
Hmgb3O54879 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC12.33□□□□□ -0.44
Hmgb3O54879 Gm13436-201ENSMUST00000120418 567 ntBASIC12.33□□□□□ -0.44
Hmgb3O54879 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC12.33□□□□□ -0.44
Hmgb3O54879 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC12.33□□□□□ -0.44
Hmgb3O54879 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.44
Hmgb3O54879 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC12.33□□□□□ -0.44
Hmgb3O54879 AC159205.6-201ENSMUST00000224935 887 ntBASIC12.33□□□□□ -0.44
Hmgb3O54879 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC12.33□□□□□ -0.44
Hmgb3O54879 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC12.33□□□□□ -0.44
Hmgb3O54879 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
Hmgb3O54879 Col6a6-202ENSMUST00000098441 8781 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
Hmgb3O54879 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Hmgb3O54879 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 Fam53a-203ENSMUST00000065162 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hmgb3O54879 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Hmgb3O54879 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
Hmgb3O54879 Gm9856-201ENSMUST00000217077 2578 ntBASIC12.32□□□□□ -0.44
Hmgb3O54879 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
Hmgb3O54879 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hmgb3O54879 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Hmgb3O54879 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms