Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col6a4A2AX52 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col6a4A2AX52 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col6a4A2AX52 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC12.55□□□□□ -0.4
Col6a4A2AX52 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC12.55□□□□□ -0.4
Col6a4A2AX52 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col6a4A2AX52 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Col6a4A2AX52 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col6a4A2AX52 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col6a4A2AX52 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col6a4A2AX52 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Col6a4A2AX52 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col6a4A2AX52 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col6a4A2AX52 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col6a4A2AX52 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC12.54□□□□□ -0.4
Col6a4A2AX52 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC12.54□□□□□ -0.4
Col6a4A2AX52 Gm15483-201ENSMUST00000120338 456 ntBASIC12.54□□□□□ -0.4
Col6a4A2AX52 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Gm6266-201ENSMUST00000203844 806 ntBASIC12.54□□□□□ -0.4
Col6a4A2AX52 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Gm5566-201ENSMUST00000116118 459 ntBASIC12.54□□□□□ -0.4
Col6a4A2AX52 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 AC090659.2-201ENSMUST00000225378 1186 ntBASIC12.54□□□□□ -0.4
Col6a4A2AX52 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a4A2AX52 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Gm13233-201ENSMUST00000118760 1443 ntBASIC12.53□□□□□ -0.4
Col6a4A2AX52 Gm13244-201ENSMUST00000118855 1446 ntBASIC12.53□□□□□ -0.4
Col6a4A2AX52 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC12.53□□□□□ -0.4
Col6a4A2AX52 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 AC158529.1-201ENSMUST00000223618 239 ntBASIC12.53□□□□□ -0.4
Col6a4A2AX52 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Prkcz2-201ENSMUST00000206136 1756 ntBASIC12.53□□□□□ -0.4
Col6a4A2AX52 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Gm6756-201ENSMUST00000180647 1620 ntBASIC12.53□□□□□ -0.4
Col6a4A2AX52 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a4A2AX52 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC12.52□□□□□ -0.4
Col6a4A2AX52 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col6a4A2AX52 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Col6a4A2AX52 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC12.52□□□□□ -0.4
Col6a4A2AX52 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col6a4A2AX52 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col6a4A2AX52 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC12.52□□□□□ -0.4
Col6a4A2AX52 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col6a4A2AX52 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col6a4A2AX52 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Col6a4A2AX52 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col6a4A2AX52 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Col6a4A2AX52 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a4A2AX52 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC12.52□□□□□ -0.41
Col6a4A2AX52 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC12.52□□□□□ -0.41
Col6a4A2AX52 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms