Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Gm13034-201ENSMUST00000121342 3177 ntBASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Gm14722-201ENSMUST00000118943 689 ntBASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Gm43935-201ENSMUST00000203569 1050 ntBASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim3Q9R1R2 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Pcgf5-211ENSMUST00000225920 6443 ntBASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim3Q9R1R2 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
Trim3Q9R1R2 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim3Q9R1R2 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim3Q9R1R2 Gm10676-201ENSMUST00000098778 3221 ntBASIC14.02□□□□□ -0.16
Trim3Q9R1R2 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim3Q9R1R2 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim3Q9R1R2 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim3Q9R1R2 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Trim3Q9R1R2 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim3Q9R1R2 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim3Q9R1R2 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim3Q9R1R2 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim3Q9R1R2 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim3Q9R1R2 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim3Q9R1R2 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC14.02□□□□□ -0.17
Trim3Q9R1R2 Gm14140-201ENSMUST00000119999 995 ntBASIC14.02□□□□□ -0.17
Trim3Q9R1R2 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC14.02□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms