Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn11aQ9R053 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Scn11aQ9R053 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn11aQ9R053 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC17.46■□□□□ 0.39
Scn11aQ9R053 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC17.46■□□□□ 0.39
Scn11aQ9R053 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Scn11aQ9R053 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC17.46■□□□□ 0.39
Scn11aQ9R053 Gm6266-201ENSMUST00000203844 806 ntBASIC17.46■□□□□ 0.39
Scn11aQ9R053 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn11aQ9R053 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn11aQ9R053 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn11aQ9R053 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn11aQ9R053 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn11aQ9R053 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Scn11aQ9R053 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn11aQ9R053 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn11aQ9R053 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn11aQ9R053 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Scn11aQ9R053 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
Scn11aQ9R053 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Scn11aQ9R053 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
Scn11aQ9R053 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Gm21854-201ENSMUST00000179901 471 ntBASIC17.45■□□□□ 0.38
Scn11aQ9R053 Gm28631-201ENSMUST00000190740 334 ntBASIC17.45■□□□□ 0.38
Scn11aQ9R053 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn11aQ9R053 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC17.44■□□□□ 0.38
Scn11aQ9R053 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn11aQ9R053 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn11aQ9R053 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn11aQ9R053 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn11aQ9R053 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn11aQ9R053 Gm27838-201ENSMUST00000184829 128 ntBASIC17.44■□□□□ 0.38
Scn11aQ9R053 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn11aQ9R053 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Scn11aQ9R053 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn11aQ9R053 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn11aQ9R053 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn11aQ9R053 Gm45667-201ENSMUST00000210380 1316 ntBASIC17.44■□□□□ 0.38
Scn11aQ9R053 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn11aQ9R053 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Scn11aQ9R053 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn11aQ9R053 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Gm13829-201ENSMUST00000119600 138 ntBASIC17.43■□□□□ 0.38
Scn11aQ9R053 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Scn11aQ9R053 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Gm42612-201ENSMUST00000197986 623 ntBASIC17.43■□□□□ 0.38
Scn11aQ9R053 Gm43170-201ENSMUST00000199827 612 ntBASIC17.43■□□□□ 0.38
Scn11aQ9R053 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn11aQ9R053 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 54.8 ms