Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Gm6152-201ENSMUST00000151704 340 ntBASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Gm18905-201ENSMUST00000205454 928 ntBASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Gm29961-201ENSMUST00000214692 644 ntTSL 5 BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Scn4aQ9ER60 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Scn4aQ9ER60 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Gm2606-201ENSMUST00000100754 1002 ntBASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Gm12537-201ENSMUST00000119266 1002 ntBASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Gm12070-201ENSMUST00000119551 1002 ntBASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Gm12671-201ENSMUST00000119978 1002 ntBASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Gm13292-201ENSMUST00000120014 1000 ntBASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Gm11658-201ENSMUST00000120913 1008 ntBASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Gm10359-201ENSMUST00000180167 1002 ntBASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Gm12033-201ENSMUST00000180654 1002 ntBASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Gm5559-201ENSMUST00000180755 1002 ntBASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Gm2467-201ENSMUST00000182266 1010 ntBASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Gm6981-201ENSMUST00000182467 1008 ntBASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Gm6621-201ENSMUST00000193251 772 ntBASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Gm7293-201ENSMUST00000216682 1007 ntBASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Gm9333-201ENSMUST00000205452 1323 ntBASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC19.98■□□□□ 0.79
Scn4aQ9ER60 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Iqck-206ENSMUST00000208658 2891 ntBASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Gm5620-201ENSMUST00000077991 1348 ntBASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Gm43338-201ENSMUST00000198617 2223 ntBASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Scn4aQ9ER60 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Gm42627-201ENSMUST00000197347 224 ntBASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Scn4aQ9ER60 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
Scn4aQ9ER60 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn4aQ9ER60 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC19.95■□□□□ 0.78
Scn4aQ9ER60 Gm8099-201ENSMUST00000200510 742 ntBASIC19.95■□□□□ 0.78
Scn4aQ9ER60 AC166997.1-201ENSMUST00000225122 572 ntBASIC19.95■□□□□ 0.78
Scn4aQ9ER60 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Scn4aQ9ER60 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Scn4aQ9ER60 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn4aQ9ER60 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn4aQ9ER60 Mxra8os-201ENSMUST00000097740 687 ntBASIC19.95■□□□□ 0.78
Scn4aQ9ER60 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn4aQ9ER60 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn4aQ9ER60 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC19.95■□□□□ 0.78
Scn4aQ9ER60 Gm8805-201ENSMUST00000117848 313 ntBASIC19.95■□□□□ 0.78
Scn4aQ9ER60 Gm13786-201ENSMUST00000122371 333 ntBASIC19.95■□□□□ 0.78
Scn4aQ9ER60 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC19.95■□□□□ 0.78
Scn4aQ9ER60 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn4aQ9ER60 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Scn4aQ9ER60 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
Scn4aQ9ER60 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Scn4aQ9ER60 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Scn4aQ9ER60 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC19.94■□□□□ 0.78
Scn4aQ9ER60 Gm16342-201ENSMUST00000124025 1025 ntBASIC19.94■□□□□ 0.78
Scn4aQ9ER60 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC19.94■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms