Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Clp1Q99LI9 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Clp1Q99LI9 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Clp1Q99LI9 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Clp1Q99LI9 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Gm11478-201ENSMUST00000117851 599 ntBASIC15.66■□□□□ 0.1
Clp1Q99LI9 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Gm12138-201ENSMUST00000122180 951 ntBASIC15.66■□□□□ 0.1
Clp1Q99LI9 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC15.66■□□□□ 0.1
Clp1Q99LI9 Gm14091-201ENSMUST00000133534 874 ntTSL 2 BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Gm45453-201ENSMUST00000211758 853 ntBASIC15.66■□□□□ 0.1
Clp1Q99LI9 Gm15823-201ENSMUST00000064305 670 ntBASIC15.66■□□□□ 0.1
Clp1Q99LI9 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Mxra8os-201ENSMUST00000097740 687 ntBASIC15.66■□□□□ 0.1
Clp1Q99LI9 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Clp1Q99LI9 Gm19430-201ENSMUST00000193847 2137 ntBASIC15.65■□□□□ 0.1
Clp1Q99LI9 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Gm26917-202ENSMUST00000192833 3329 ntBASIC15.65■□□□□ 0.1
Clp1Q99LI9 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Tcf21-202ENSMUST00000218002 1788 ntBASIC15.65■□□□□ 0.1
Clp1Q99LI9 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC15.65■□□□□ 0.1
Clp1Q99LI9 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Gm9522-201ENSMUST00000182394 926 ntBASIC15.65■□□□□ 0.1
Clp1Q99LI9 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Gm9115-201ENSMUST00000120192 1348 ntBASIC15.65■□□□□ 0.1
Clp1Q99LI9 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Clp1Q99LI9 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Gm37748-201ENSMUST00000194379 1140 ntBASIC15.64■□□□□ 0.09
Clp1Q99LI9 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Gm9908-201ENSMUST00000211534 448 ntBASIC15.64■□□□□ 0.09
Clp1Q99LI9 Gm9229-201ENSMUST00000222777 126 ntBASIC15.64■□□□□ 0.09
Clp1Q99LI9 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Clp1Q99LI9 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC15.64■□□□□ 0.09
Clp1Q99LI9 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC15.64■□□□□ 0.09
Clp1Q99LI9 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC15.63■□□□□ 0.09
Clp1Q99LI9 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC15.63■□□□□ 0.09
Clp1Q99LI9 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Clp1Q99LI9 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Clp1Q99LI9 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Clp1Q99LI9 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms