Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Trim56Q80VI1 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim56Q80VI1 Rprl2-201ENSMUST00000157150 290 ntBASIC17.58■□□□□ 0.4
Trim56Q80VI1 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim56Q80VI1 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim56Q80VI1 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Trim56Q80VI1 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim56Q80VI1 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Trim56Q80VI1 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim56Q80VI1 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Trim56Q80VI1 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Gm6018-201ENSMUST00000216090 1306 ntBASIC17.57■□□□□ 0.4
Trim56Q80VI1 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC17.57■□□□□ 0.4
Trim56Q80VI1 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC17.57■□□□□ 0.4
Trim56Q80VI1 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Trim56Q80VI1 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC17.57■□□□□ 0.4
Trim56Q80VI1 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Gm26308-201ENSMUST00000157768 69 ntBASIC17.57■□□□□ 0.4
Trim56Q80VI1 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Trim56Q80VI1 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC17.57■□□□□ 0.4
Trim56Q80VI1 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim56Q80VI1 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim56Q80VI1 CT025626.1-201ENSMUST00000223735 1455 ntBASIC17.56■□□□□ 0.4
Trim56Q80VI1 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Carlr-201ENSMUST00000181515 2574 ntBASIC17.56■□□□□ 0.4
Trim56Q80VI1 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Gm42632-201ENSMUST00000201707 2411 ntBASIC17.56■□□□□ 0.4
Trim56Q80VI1 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Trav13-3-201ENSMUST00000117226 336 ntBASIC17.56■□□□□ 0.4
Trim56Q80VI1 Gm13464-201ENSMUST00000119418 935 ntBASIC17.56■□□□□ 0.4
Trim56Q80VI1 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Mir6990-201ENSMUST00000183724 91 ntBASIC17.56■□□□□ 0.4
Trim56Q80VI1 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Trim56Q80VI1 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Camk2g-217ENSMUST00000226630 1937 ntBASIC17.56■□□□□ 0.4
Trim56Q80VI1 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim56Q80VI1 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Gm9768-201ENSMUST00000206007 2861 ntBASIC17.55■□□□□ 0.4
Trim56Q80VI1 Gm10605-202ENSMUST00000183019 3198 ntBASIC17.55■□□□□ 0.4
Trim56Q80VI1 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Gm12017-201ENSMUST00000122453 1003 ntBASIC17.55■□□□□ 0.4
Trim56Q80VI1 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Gm27920-201ENSMUST00000183953 96 ntBASIC17.55■□□□□ 0.4
Trim56Q80VI1 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Gm9867-201ENSMUST00000192212 2647 ntBASIC17.55■□□□□ 0.4
Trim56Q80VI1 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Trim56Q80VI1 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms