Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim28Q62318 Gm6222-201ENSMUST00000120787 396 ntBASIC19.27■□□□□ 0.68
Trim28Q62318 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim28Q62318 Mir7684-201ENSMUST00000183858 60 ntBASIC19.27■□□□□ 0.68
Trim28Q62318 Mir8102-201ENSMUST00000184148 139 ntBASIC19.27■□□□□ 0.68
Trim28Q62318 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Trim28Q62318 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC19.27■□□□□ 0.68
Trim28Q62318 Dupd1-202ENSMUST00000224735 548 ntBASIC19.27■□□□□ 0.68
Trim28Q62318 AC149588.3-201ENSMUST00000227515 150 ntBASIC19.27■□□□□ 0.68
Trim28Q62318 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim28Q62318 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim28Q62318 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim28Q62318 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim28Q62318 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC19.27■□□□□ 0.68
Trim28Q62318 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC19.27■□□□□ 0.68
Trim28Q62318 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim28Q62318 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim28Q62318 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim28Q62318 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim28Q62318 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim28Q62318 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim28Q62318 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim28Q62318 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Trim28Q62318 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
Trim28Q62318 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
Trim28Q62318 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Trim28Q62318 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Trim28Q62318 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim28Q62318 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim28Q62318 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim28Q62318 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trim28Q62318 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim28Q62318 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim28Q62318 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim28Q62318 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim28Q62318 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Trim28Q62318 Gm15487-201ENSMUST00000122373 465 ntBASIC19.25■□□□□ 0.67
Trim28Q62318 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC19.25■□□□□ 0.67
Trim28Q62318 Gm10275-202ENSMUST00000168697 495 ntBASIC19.25■□□□□ 0.67
Trim28Q62318 Gm45453-201ENSMUST00000211758 853 ntBASIC19.25■□□□□ 0.67
Trim28Q62318 AC125206.2-201ENSMUST00000217454 574 ntBASIC19.25■□□□□ 0.67
Trim28Q62318 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Trim28Q62318 Gm10275-201ENSMUST00000092620 635 ntBASIC19.25■□□□□ 0.67
Trim28Q62318 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC19.25■□□□□ 0.67
Trim28Q62318 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trim28Q62318 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trim28Q62318 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim28Q62318 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim28Q62318 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim28Q62318 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim28Q62318 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC19.25■□□□□ 0.67
Trim28Q62318 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trim28Q62318 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim28Q62318 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim28Q62318 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Trim28Q62318 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Trim28Q62318 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim28Q62318 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim28Q62318 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim28Q62318 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim28Q62318 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Trim28Q62318 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC19.24■□□□□ 0.67
Trim28Q62318 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Trim28Q62318 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim28Q62318 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim28Q62318 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
Trim28Q62318 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC19.24■□□□□ 0.67
Trim28Q62318 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim28Q62318 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim28Q62318 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim28Q62318 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim28Q62318 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Trim28Q62318 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim28Q62318 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Trim28Q62318 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim28Q62318 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim28Q62318 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim28Q62318 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim28Q62318 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim28Q62318 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim28Q62318 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim28Q62318 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim28Q62318 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trim28Q62318 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC19.23■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms