Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Trav3-1Q5R1I8 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Trav3-1Q5R1I8 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Trav3-1Q5R1I8 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Trav3-1Q5R1I8 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Trav3-1Q5R1I8 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Trav3-1Q5R1I8 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Trav3-1Q5R1I8 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Trav3-1Q5R1I8 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Trav3-1Q5R1I8 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Trav3-1Q5R1I8 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Trav3-1Q5R1I8 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Trav3-1Q5R1I8 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
Trav3-1Q5R1I8 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Trav3-1Q5R1I8 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC10.07□□□□□ -0.8
Trav3-1Q5R1I8 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Trav3-1Q5R1I8 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Trav3-1Q5R1I8 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Trav3-1Q5R1I8 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Trav3-1Q5R1I8 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Trav3-1Q5R1I8 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Trav3-1Q5R1I8 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Trav3-1Q5R1I8 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Trav3-1Q5R1I8 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms