Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Usp28Q5I043 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC16.95■□□□□ 0.3
Usp28Q5I043 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 Gm11764-201ENSMUST00000120221 623 ntBASIC16.95■□□□□ 0.3
Usp28Q5I043 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Usp28Q5I043 Gm4899-201ENSMUST00000178708 719 ntBASIC16.95■□□□□ 0.3
Usp28Q5I043 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Usp28Q5I043 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp28Q5I043 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp28Q5I043 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp28Q5I043 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Usp28Q5I043 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Usp28Q5I043 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Usp28Q5I043 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC16.94■□□□□ 0.3
Usp28Q5I043 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp28Q5I043 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Usp28Q5I043 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp28Q5I043 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Usp28Q5I043 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp28Q5I043 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
Usp28Q5I043 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Usp28Q5I043 Gm18246-201ENSMUST00000221023 728 ntBASIC16.94■□□□□ 0.3
Usp28Q5I043 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC16.94■□□□□ 0.3
Usp28Q5I043 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Usp28Q5I043 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Usp28Q5I043 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC16.94■□□□□ 0.3
Usp28Q5I043 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp28Q5I043 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp28Q5I043 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp28Q5I043 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp28Q5I043 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp28Q5I043 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp28Q5I043 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
Usp28Q5I043 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp28Q5I043 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Usp28Q5I043 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Usp28Q5I043 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Usp28Q5I043 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp28Q5I043 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp28Q5I043 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp28Q5I043 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Usp28Q5I043 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Usp28Q5I043 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp28Q5I043 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Usp28Q5I043 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC16.93■□□□□ 0.3
Usp28Q5I043 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Usp28Q5I043 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp28Q5I043 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp28Q5I043 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Usp28Q5I043 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Usp28Q5I043 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp28Q5I043 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Usp28Q5I043 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Usp28Q5I043 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp28Q5I043 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Usp28Q5I043 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Usp28Q5I043 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp28Q5I043 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp28Q5I043 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Usp28Q5I043 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Gm44645-201ENSMUST00000205492 1653 ntBASIC16.92■□□□□ 0.3
Usp28Q5I043 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC16.92■□□□□ 0.3
Usp28Q5I043 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC16.92■□□□□ 0.3
Usp28Q5I043 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC16.92■□□□□ 0.3
Usp28Q5I043 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC16.92■□□□□ 0.3
Usp28Q5I043 Gm7862-201ENSMUST00000121461 292 ntBASIC16.92■□□□□ 0.3
Usp28Q5I043 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Usp28Q5I043 Umpk-ps-201ENSMUST00000211897 827 ntBASIC16.92■□□□□ 0.3
Usp28Q5I043 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC16.92■□□□□ 0.3
Usp28Q5I043 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC16.92■□□□□ 0.3
Usp28Q5I043 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms