Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm8825-201ENSMUST00000182565 998 ntBASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Gm4518-201ENSMUST00000182638 718 ntBASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Gm8330-201ENSMUST00000182754 1008 ntBASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Gm4575-201ENSMUST00000182991 1002 ntBASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Gm8709-201ENSMUST00000183230 1012 ntBASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Gm10293-201ENSMUST00000076317 1002 ntBASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Gm6316-201ENSMUST00000082064 1020 ntBASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim40Q3UWA4 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim40Q3UWA4 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Trim40Q3UWA4 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Trim40Q3UWA4 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Gm28182-201ENSMUST00000188354 2477 ntBASIC14□□□□□ -0.17
Trim40Q3UWA4 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Trim40Q3UWA4 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Trim40Q3UWA4 Gm1818-201ENSMUST00000169406 1184 ntBASIC14□□□□□ -0.17
Trim40Q3UWA4 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Trim40Q3UWA4 Gm45328-201ENSMUST00000210942 917 ntBASIC14□□□□□ -0.17
Trim40Q3UWA4 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Trim40Q3UWA4 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC14□□□□□ -0.17
Trim40Q3UWA4 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC14□□□□□ -0.17
Trim40Q3UWA4 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim40Q3UWA4 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Celf4-206ENSMUST00000224553 1729 ntBASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim40Q3UWA4 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms