Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3bQ3ULL6 Gm43598-201ENSMUST00000202482 2479 ntBASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Gm5712-201ENSMUST00000199748 1043 ntBASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Upf3bQ3ULL6 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
Upf3bQ3ULL6 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Upf3bQ3ULL6 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Gm15593-201ENSMUST00000122085 1008 ntBASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Gm43332-201ENSMUST00000202511 1044 ntBASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Gm10313-201ENSMUST00000095320 1002 ntBASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Gm16425-201ENSMUST00000118143 3130 ntBASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC15.95■□□□□ 0.14
Upf3bQ3ULL6 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Gm16198-201ENSMUST00000118766 670 ntBASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Gm44492-201ENSMUST00000197012 141 ntBASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Gm45747-201ENSMUST00000212203 999 ntBASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Gm10154-201ENSMUST00000084445 354 ntBASIC15.94■□□□□ 0.14
Upf3bQ3ULL6 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 58.6 ms