Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC17.54■□□□□ 0.4
Limch1Q3UH68 AC147366.1-201ENSMUST00000227671 852 ntBASIC17.54■□□□□ 0.4
Limch1Q3UH68 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Gm37736-201ENSMUST00000193564 2802 ntBASIC17.54■□□□□ 0.4
Limch1Q3UH68 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Limch1Q3UH68 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Gm10576-201ENSMUST00000191927 825 ntBASIC17.53■□□□□ 0.4
Limch1Q3UH68 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC17.53■□□□□ 0.4
Limch1Q3UH68 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC17.53■□□□□ 0.4
Limch1Q3UH68 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Limch1Q3UH68 Gm44443-201ENSMUST00000204396 5633 ntBASIC17.53■□□□□ 0.4
Limch1Q3UH68 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Limch1Q3UH68 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Limch1Q3UH68 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Limch1Q3UH68 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Limch1Q3UH68 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Limch1Q3UH68 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Limch1Q3UH68 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC17.52■□□□□ 0.4
Limch1Q3UH68 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC17.52■□□□□ 0.4
Limch1Q3UH68 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Limch1Q3UH68 Auts2-212ENSMUST00000178555 309 ntBASIC17.52■□□□□ 0.4
Limch1Q3UH68 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC17.52■□□□□ 0.4
Limch1Q3UH68 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Limch1Q3UH68 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC17.52■□□□□ 0.4
Limch1Q3UH68 AC159295.1-201ENSMUST00000225326 940 ntBASIC17.52■□□□□ 0.4
Limch1Q3UH68 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
Limch1Q3UH68 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Limch1Q3UH68 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Limch1Q3UH68 Gm29361-201ENSMUST00000183323 2000 ntBASIC17.52■□□□□ 0.39
Limch1Q3UH68 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Limch1Q3UH68 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Gm17271-201ENSMUST00000165535 355 ntBASIC17.51■□□□□ 0.39
Limch1Q3UH68 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Limch1Q3UH68 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Limch1Q3UH68 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Limch1Q3UH68 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Limch1Q3UH68 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Limch1Q3UH68 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Limch1Q3UH68 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC17.5■□□□□ 0.39
Limch1Q3UH68 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Limch1Q3UH68 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Limch1Q3UH68 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC17.5■□□□□ 0.39
Limch1Q3UH68 Gm15920-201ENSMUST00000118998 402 ntBASIC17.5■□□□□ 0.39
Limch1Q3UH68 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Limch1Q3UH68 Gm43767-201ENSMUST00000198933 381 ntBASIC17.5■□□□□ 0.39
Limch1Q3UH68 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Limch1Q3UH68 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Limch1Q3UH68 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Limch1Q3UH68 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Limch1Q3UH68 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Limch1Q3UH68 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Limch1Q3UH68 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Limch1Q3UH68 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Limch1Q3UH68 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Limch1Q3UH68 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms