Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Usp39Q3TIX9 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 AC159106.1-201ENSMUST00000224421 690 ntBASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Usp39Q3TIX9 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Gm11594-201ENSMUST00000122313 162 ntBASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Gm5364-201ENSMUST00000216789 889 ntBASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC14.44□□□□□ -0.1
Usp39Q3TIX9 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Gm12350-201ENSMUST00000121208 462 ntBASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Gm10499-201ENSMUST00000174094 934 ntBASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Gm44357-201ENSMUST00000195897 142 ntBASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Gm19658-201ENSMUST00000196231 138 ntBASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Gm44367-201ENSMUST00000196836 138 ntBASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Gm44350-201ENSMUST00000197197 138 ntBASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Gm44390-201ENSMUST00000197533 144 ntBASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Gm44313-201ENSMUST00000198018 138 ntBASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Gm44486-201ENSMUST00000198508 138 ntBASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Gm44314-201ENSMUST00000199263 138 ntBASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Gm44394-201ENSMUST00000199558 138 ntBASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Gm44484-201ENSMUST00000199873 138 ntBASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Gm44466-201ENSMUST00000200264 138 ntBASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Gm44359-201ENSMUST00000200671 138 ntBASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC14.43□□□□□ -0.1
Usp39Q3TIX9 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms